View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9355_low_2 (Length: 387)
Name: NF9355_low_2
Description: NF9355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9355_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 6 - 372
Target Start/End: Complemental strand, 42888411 - 42888044
Alignment:
| Q |
6 |
agaagcagagagattaggcttaaaaacaacaatcaatgagtggcgatgagagaggaagaaagaggagattgtgtgagggagaatgaagacggttactgat |
105 |
Q |
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| T |
42888411 |
agaatcagagagattagggttaaaaacaacaatcaatgagtggcgatgagagaggaagaaataggagattgtgtgagggagaatgaagacggttactgat |
42888312 |
T |
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| Q |
106 |
tcagtaatttgnnnnnnn-attttattaaataatacttatatttttaatagaaactcaacccttaaattaatttctgtcacatgtcttacatcgtatctt |
204 |
Q |
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| T |
42888311 |
tcagtgatttgttttttttattctattaaataatacttatatttttaatagaaactcaacccttaaattaatttatgtcacatgtcttacttcgtacctt |
42888212 |
T |
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| Q |
205 |
aaatggattaaatggagttttgtgtaaatgaaacatatctggactccataacctaaccgagttaggtcacaacacataccttaaaattttgaagatctaa |
304 |
Q |
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| T |
42888211 |
aaatggattaaatggagtcttgtgtaaatggagcatatctgaactccatagcctaaccgagttaggtcacaacacataccttaaaattttgaagatctaa |
42888112 |
T |
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| Q |
305 |
attcttgtaaaaacattaaatagaaatgtgtaaaagcttaaattctaatatcaataaatccaaaaagt |
372 |
Q |
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| T |
42888111 |
attcttgtaaaaacattaaatagaaatgtgtaaaagcttaaattctaatatcaataaatccaaaaagt |
42888044 |
T |
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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 233
Target Start/End: Complemental strand, 29380684 - 29380585
Alignment:
| Q |
135 |
taatacttatatttttaatagaaactcaacccttaaattaatttctgtcacatgtcttacat-cgtatcttaaatggattaaatggagttttgtgtaaat |
233 |
Q |
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| T |
29380684 |
taatgcttatattataaataaaaactcagcccttggattaatttctgccatatgtcttacgtccgtaccttaaatggaataaatggagccttgtgtaaat |
29380585 |
T |
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