View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9356_high_5 (Length: 309)
Name: NF9356_high_5
Description: NF9356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9356_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 20 - 282
Target Start/End: Complemental strand, 6939308 - 6939053
Alignment:
| Q |
20 |
gtggcctcaaggaaatccaatatttaggtaattaataattttgtattttattattgtacaaacactcgcacacacatgttaacttttgatttatattgaa |
119 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
6939308 |
gtggcctcaaggaaatccaatttttaggtaattaataattttgtattttattattgtacaaacactc--acacacatgttaacttttgatttatattgaa |
6939211 |
T |
|
| Q |
120 |
tacaataggacctggatcgcctactgtaaatgcttcacacagtagctggtttgaaccttagaaaagtgattttacagttcagatttatttatctgatttt |
219 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6939210 |
tacaataggacctagatcgcctattgtaaatgcttcacacagtagctgatttaaaccatagaaaagtgattttacagttcagatttatttatctgatttt |
6939111 |
T |
|
| Q |
220 |
cacaaaatttgatttcaattcagccaccgattaaagatcggacggctgagatatgttacagca |
282 |
Q |
| |
|
|||| | |||||||||| | |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
6939110 |
cacacagtttgatttcagt-----caccgattaaagatcggacggctgagatgtgttacagca |
6939053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 6931905 - 6931853
Alignment:
| Q |
20 |
gtggcctcaaggaaatccaatatttaggtaattaataattttgtattttatta |
72 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||| |||||||||| |
|
|
| T |
6931905 |
gtggcctcaaggaaatccaacttttaggtaattaattgttttttattttatta |
6931853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 127 - 303
Target Start/End: Original strand, 43681907 - 43682078
Alignment:
| Q |
127 |
ggacctggatcgcctactgtaaatgcttcacacagtagctggtttgaaccttagaaaagtgattttacagttcagatttatttatctgattttcacaaaa |
226 |
Q |
| |
|
|||||| |||||||| ||||||||||||||| ||||||||| | |||||| ||||||||||||| ||||||||||||||||| || | |||||||| | |
|
|
| T |
43681907 |
ggacctagatcgcctgctgtaaatgcttcacgcagtagctgatctgaaccgtagaaaagtgattcaacagttcagatttatttgtccggttttcacacag |
43682006 |
T |
|
| Q |
227 |
tttgatttcaattcagccaccgattaaagatcggacggctgagatatgttacagcaggacgctgttagaacaccaaa |
303 |
Q |
| |
|
|||||| ||||||||||||| | ||||||||||||||||| |||||||||||||| ||||| ||||||||| |
|
|
| T |
43682007 |
tttgat-----ctcagccaccgattgaggatcggacggctgagatctgttacagcaggacactgttgcaacaccaaa |
43682078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 239 - 287
Target Start/End: Original strand, 5859107 - 5859155
Alignment:
| Q |
239 |
tcagccaccgattaaagatcggacggctgagatatgttacagcaggacg |
287 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
5859107 |
tcagccatcgattaaagatcggacggcggagatatgttacatcaggacg |
5859155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 178 - 213
Target Start/End: Original strand, 5859062 - 5859097
Alignment:
| Q |
178 |
tagaaaagtgattttacagttcagatttatttatct |
213 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5859062 |
tagaaaagtgatttaacagttcagatttatttatct |
5859097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University