View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9356_high_9 (Length: 248)
Name: NF9356_high_9
Description: NF9356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9356_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 3 - 233
Target Start/End: Original strand, 3202936 - 3203166
Alignment:
| Q |
3 |
gagtttcgtggtcaacataatcgtatggaagggatgaatttacgatgttccttgctccaatgatcttcttgttacaaatcctctcccctgtgaattcaca |
102 |
Q |
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| T |
3202936 |
gagttccgtggccaacataatcgtatggaagggatgaatttacgatgttccttgctccaatgatcttcttgttacaaatcctctcccctgtgaattcaca |
3203035 |
T |
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| Q |
103 |
atggccattccattttgcaggtggagaaggcattccctcatcggaaaaggaaggatgtgagagggttattcctgtgtccagcattccaattatgatccct |
202 |
Q |
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| T |
3203036 |
atggccattccattttgcaggtggagaaggcattccctcatcggaaaaggaaggatgtgagagggttattcctgtgtccagcattccaattatgatccct |
3203135 |
T |
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| Q |
203 |
ttaccttgattggaatttccccacaattctt |
233 |
Q |
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| T |
3203136 |
ttaccttgattggaatttccccacaattctt |
3203166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 15 - 233
Target Start/End: Original strand, 3208922 - 3209140
Alignment:
| Q |
15 |
caacataatcgtatggaagggatgaatttacgatgttccttgctccaatgatcttcttgttacaaatcctctcccctgtgaattcacaatggccattcca |
114 |
Q |
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| T |
3208922 |
caacatcatcgtatggaagggatgaatttacaaaggtccttgctccaatgatcttcttgttacaaatcctctcccctgtgaattcacaatggccattcca |
3209021 |
T |
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| Q |
115 |
ttttgcaggtggagaaggcattccctcatcggaaaaggaaggatgtgagagggttattcctgtgtccagcattccaattatgatccctttaccttgattg |
214 |
Q |
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| T |
3209022 |
ttttgcaggtggtgaaggcatcccctcatcagaaaaggaaggatgtgagagggttattcctgtgtcgacgattccaattatgatccctttaccttgattg |
3209121 |
T |
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| Q |
215 |
gaatttccccacaattctt |
233 |
Q |
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| T |
3209122 |
gaatttccccacaagtctt |
3209140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 44 - 220
Target Start/End: Original strand, 3216899 - 3217075
Alignment:
| Q |
44 |
acgatgttccttgctccaatgatcttcttgttacaaatcctctcccctgtgaattcacaatggccattccattttgcaggtggagaaggcattccctcat |
143 |
Q |
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| T |
3216899 |
acgaagttccttgctccaatgagcttcttgttacaaatcctttcccctgtgaattcacagtggccattccattttgcaggtggagagggcattccctcgt |
3216998 |
T |
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| Q |
144 |
cggaaaaggaaggatgtgagagggttattcctgtgtccagcattccaattatgatccctttaccttgattggaattt |
220 |
Q |
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| T |
3216999 |
cagaaaaggaaggatgggagagggatattcctgtgtccaggattccaattatgatccctttaccgagattggaattt |
3217075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 126
Target Start/End: Original strand, 3232106 - 3232140
Alignment:
| Q |
92 |
gtgaattcacaatggccattccattttgcaggtgg |
126 |
Q |
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| T |
3232106 |
gtgaattcacaatggcctttccattttgcaggtgg |
3232140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 126
Target Start/End: Complemental strand, 3177934 - 3177901
Alignment:
| Q |
93 |
tgaattcacaatggccattccattttgcaggtgg |
126 |
Q |
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| T |
3177934 |
tgaattcacaatggcctttccattttgcaggtgg |
3177901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 145
Target Start/End: Original strand, 3221873 - 3221926
Alignment:
| Q |
92 |
gtgaattcacaatggccattccattttgcaggtggagaaggcattccctcatcg |
145 |
Q |
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| T |
3221873 |
gtgaattcgcaatggcctttccattttgcaggtggtggcggcattccttcatcg |
3221926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 126
Target Start/End: Original strand, 3240906 - 3240939
Alignment:
| Q |
93 |
tgaattcacaatggccattccattttgcaggtgg |
126 |
Q |
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| T |
3240906 |
tgaattcacaatggcctttccattttgcaggtgg |
3240939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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