View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9356_low_1 (Length: 666)
Name: NF9356_low_1
Description: NF9356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9356_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 31409458 - 31409850
Alignment:
| Q |
1 |
tgacgtgttttcgagtcatggaatctagctcgtgccatcgtcggcagacttgtgaaactgcgtcccggtcttttggatcggttatgtaagggattacaca |
100 |
Q |
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| T |
31409458 |
tgacgtgttttcgagtcatggaatctagctcgtgccatcgtcggcagacttgtgaaactgcgtcccggtcttttggatcggttatgtaagggattacaca |
31409557 |
T |
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| Q |
101 |
gtctaagactacgtcgatgatgcggttgccgttaagtcttacgttccgatcttcttccgccatagatagatctaacgagaatttgaaaagatc------- |
193 |
Q |
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| T |
31409558 |
gtctaagactacgtcgatgatgcggttgccgttaagtcttacgttccgatcttcttccgccatagatagatctaacgagaatttgaaaagatctatatat |
31409657 |
T |
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| Q |
194 |
-------tatatatatcagttttagatgagttgggtctcgaggttcattagagtcaggacagacgaatctaactcaactagagatacttatagactgaag |
286 |
Q |
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| T |
31409658 |
atatatatatatatatcagttttagatgagttgggtctcgaggttcaccagagtcgggacagacgaatctaactcaactagagatacttatagactgaag |
31409757 |
T |
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| Q |
287 |
tcaactttgaaaataagattgatatagagattgaagagataagattggatgagatgagaaggaggtagttactattgtaagggtggaaacgat |
379 |
Q |
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| T |
31409758 |
tcaactttgaaaataagattgatatagagattgaagagataagattggatgagatgagaaggaggtagttactattgtaagggtggaaacgat |
31409850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 435 - 647
Target Start/End: Original strand, 31409906 - 31410120
Alignment:
| Q |
435 |
gtgaggatgatgatagtgttttttgtgtaagtgtactaatcttttttaatcttgttgttgtgaattatggttttnnnnnnnnnnnnnnn--tggtatact |
532 |
Q |
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| T |
31409906 |
gtgaggatgatgatagtgttttttgtgtaagtgtactaatcttttttaatcttgttgttgtgaattatggttttgagagagagagagagagtggtatact |
31410005 |
T |
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| Q |
533 |
attggtgtggtggggttgaaggggagggaatggaggaaacgacaaaacttgttacagaattcattggttacgtggtgtgatgtgacacgtaatcttttct |
632 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31410006 |
attggtgtggtggggttgaaggggagggaatggaggaaacgacaaaacttgttacagaattcattggttacgtggtgtgatgtgacacgtaatcttttct |
31410105 |
T |
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| Q |
633 |
gttatttgatggttt |
647 |
Q |
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| T |
31410106 |
gttatttgatggttt |
31410120 |
T |
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