View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9356_low_10 (Length: 370)
Name: NF9356_low_10
Description: NF9356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9356_low_10 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 23 - 370
Target Start/End: Complemental strand, 38342571 - 38342224
Alignment:
| Q |
23 |
aaccaagtatgctcacttctttctcaatcaaagaattgtatccacatagatgcatcttatgaataatcacaatgacacaacttgttgtattaaatatatt |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38342571 |
aaccaagtatgctcacttctttctcaatcaaagaattgtatccacatagatgcatcttatgaataatcacaatgacacaacttgttgtattaaatatatt |
38342472 |
T |
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| Q |
123 |
caagccatcacagacaattgaattcattacatacctggacctatttaccacaaccattttcttggtatcccaacacagtctccgtgactgggctctatca |
222 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
38342471 |
caagccatcacagacaattgaattcattacatacccagacctatttaccacaaccattttcttggtatcccaacacagtctctgtgactgggctctatca |
38342372 |
T |
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| Q |
223 |
aaacaatatgcagaattattctccaattttgtgcccagataatctccaacatcctactagaatatatgccacgccacaacatcagcatgcattcacgccc |
322 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
38342371 |
aaacaatatgcagaattattctccaattttgtgcccaaataatctccaacatcctactagaatatatgccacgccacaacatcagcacgcattcacgccc |
38342272 |
T |
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| Q |
323 |
aaagcaccaactctagattatagctcagctttgttccagctgctatcc |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38342271 |
aaagcaccaactctagattatagctcagctttgttccagctgctatcc |
38342224 |
T |
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