View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9356_low_11 (Length: 369)
Name: NF9356_low_11
Description: NF9356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9356_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 51 - 355
Target Start/End: Complemental strand, 17798037 - 17797724
Alignment:
| Q |
51 |
ccttcattatatagtcagatcagatgtaaatatcacaagtcttgtacaaaattatctaattatgtcacataagagctcctaaaacaaggtcgttaaaatc |
150 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17798037 |
ccttcattatatagtcagatcagatgtaaatatcacaagttttgtacaaaattatctaattatgtcacataagagctcctaaaacaaggtcgttaaaatc |
17797938 |
T |
|
| Q |
151 |
gtgaatcaacgcatagtcttacgtttccactagtctaggtattaatatcaagtttactcaaatgtaaactcaaatttttacatactcggaaatgaaattc |
250 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17797937 |
gtgaatcaacgcatagtcttacgtttccactagtcgaggtattaatatcaagtttactcaaatgtaaactcaaatttttacatactcggaaatgaaattc |
17797838 |
T |
|
| Q |
251 |
agtttattcaattgagtcgtacgattccacgagtctaggtattaattgtgtgtttgtactt---------ttggtgctatgagggatgagtgtgtttatt |
341 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
17797837 |
agtttattcaattgagtcgtacgattccacgagtctaggtattaattgtgtgtttgtacttttggagcttttggtgctatgagggatgagtgtgtttatt |
17797738 |
T |
|
| Q |
342 |
acaatgaagctttc |
355 |
Q |
| |
|
|||||||||||||| |
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| T |
17797737 |
acaatgaagctttc |
17797724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 51 - 355
Target Start/End: Complemental strand, 19106477 - 19106164
Alignment:
| Q |
51 |
ccttcattatatagtcagatcagatgtaaatatcacaagtcttgtacaaaattatctaattatgtcacataagagctcctaaaacaaggtcgttaaaatc |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19106477 |
ccttcattatatagtcagatcagatgtaaatatcacaagttttgtacaaaattatctaattatgtcacataagagctcctaaaacaaggtcgttaaaatc |
19106378 |
T |
|
| Q |
151 |
gtgaatcaacgcatagtcttacgtttccactagtctaggtattaatatcaagtttactcaaatgtaaactcaaatttttacatactcggaaatgaaattc |
250 |
Q |
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|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19106377 |
gtgaatcaacgcatagtcttacgtttccactagtcgaggtattaatatcaagtttactcaaatgtaaactcaaatttttacatactcggaaatgaaattc |
19106278 |
T |
|
| Q |
251 |
agtttattcaattgagtcgtacgattccacgagtctaggtattaattgtgtgtttgtactt---------ttggtgctatgagggatgagtgtgtttatt |
341 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
19106277 |
agtttattcaattgagtcgtacgattccacgagtctaggtattaattgtgtgtttgtacttttggagcttttggtgctatgagggatgagtgtgtttatt |
19106178 |
T |
|
| Q |
342 |
acaatgaagctttc |
355 |
Q |
| |
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|||||||||||||| |
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|
| T |
19106177 |
acaatgaagctttc |
19106164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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