View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9356_low_12 (Length: 360)
Name: NF9356_low_12
Description: NF9356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9356_low_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 22 - 343
Target Start/End: Complemental strand, 39859042 - 39858721
Alignment:
| Q |
22 |
agaaaaagcacaaattaaagaaatggcagagactcacttgtacactatgataaaggtgttccaagcttgctttcctagaattttgttttgtttgtgtctt |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39859042 |
agaaaaagcacaaattaaagaaatggcagagactcacttgtacactatgataaaggtgttccaagcttgctttcctagaattttgttttgtttgtgtctt |
39858943 |
T |
|
| Q |
122 |
tagaaacatgctgttaattgctcaatcagattgtatttttatttatttatactgataacatataatacttctaaggtggtacgagatgaagaccttgcag |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39858942 |
tagaaacatgctgttaattgctcaatcagattgtatttttatttatttatactgataacatataatacttctaaggtggtacgagatgaagaccttgcag |
39858843 |
T |
|
| Q |
222 |
aacaaattggaaatgatatatattttgatctcgtagaccttgacaaagtgaggagtttccgtgttgaaaagcagacgtcatttaacgttttcaaggtatc |
321 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
39858842 |
aacaaattggaaatgacatatattttgatctcgtagaccttgacaaagtgaggagtttccgtgttaaaaagcagacgtcatttaacgttttcaaggtatc |
39858743 |
T |
|
| Q |
322 |
atatcatcagttacactcttac |
343 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
39858742 |
atatcatcagttacactcttac |
39858721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 62 - 343
Target Start/End: Complemental strand, 39912883 - 39912606
Alignment:
| Q |
62 |
tacactatgataaaggtgttccaagcttgctttcctagaattttgttttgtttgtgtctttagaaacatgctgttaattgctcaatcagattgtattttt |
161 |
Q |
| |
|
|||||||| |||||||||||| |||||||||| ||| || || || |||||||| ||||||||||||||||||||||||||||||| ||||||||| | |
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|
| T |
39912883 |
tacactattataaaggtgttctaagcttgcttcactataaattagtattgtttgt--ctttagaaacatgctgttaattgctcaatcatattgtatttat |
39912786 |
T |
|
| Q |
162 |
atttatttatactgataacatataatacttctaaggtggtacgagatgaagaccttgcagaacaaattggaaatgatatatattttgatctcgtagacct |
261 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||| |||||||| |||||||||||| |||| ||||||| |
|
|
| T |
39912785 |
atttatatatactgataacacataatacttcttaggtgatacgagatgaagaccttgcagaacagattggaaaggatatatattttaatcttgtagacca |
39912686 |
T |
|
| Q |
262 |
tgacaaagtgaggagtttccgtgttgaaaagcagacgtcatttaacgttttcaaggtatcatatcatcagttacactcttac |
343 |
Q |
| |
|
|| ||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||| ||||||| ||||||| |||| |
|
|
| T |
39912685 |
tgggaaagtgaggagtttctgtgttcaaaagcagacatcatttaacgttttcaaggtatc--atcatcaattacactattac |
39912606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 24 - 343
Target Start/End: Complemental strand, 39866657 - 39866343
Alignment:
| Q |
24 |
aaaaagcacaaat-taaagaaatggcagagactcacttgtacactatgataaaggtgttccaagcttgctttcctagaattttgttttgtttgtgtcttt |
122 |
Q |
| |
|
|||||||||||| |||||||| || |||||||||| | ||||||| ||||||||| || |||||||||| |||||| |||||||||||||| ||||| |
|
|
| T |
39866657 |
aaaaagcacaaaaataaagaaaaggaagagactcacctccacactattataaaggtgatctaagcttgcttccctagatatttgttttgtttgtatcttt |
39866558 |
T |
|
| Q |
123 |
agaaacatgctgttaattgctcaatcagattgtatttttatttatttatactgataacatataatacttctaaggtggtacgagatgaagaccttgcaga |
222 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||||||| |||||||| | | ||||||||| |||| ||||||||||||||||||||| | |
|
|
| T |
39866557 |
agaaacatgctgttaacggctcaatcagattgtatttatatttat----actgataataaaaaatacttctcaggttgtacgagatgaagaccttgcaaa |
39866462 |
T |
|
| Q |
223 |
acaaattggaaatgatatatattttgatctcgtagaccttgacaaagtgaggagtttccgtgttgaaaagcagacgtcatttaacgttttcaaggtatca |
322 |
Q |
| |
|
||| ||||||| ||||||||||||||||||||||| |||||||||||||| ||||| |||| ||||||||| |||||||||| ||||||||||||| |
|
|
| T |
39866461 |
acaggttggaaagtatatatattttgatctcgtagactatgacaaagtgaggattttccatgttcaaaagcagatgtcatttaacattttcaaggtatc- |
39866363 |
T |
|
| Q |
323 |
tatcatcagttacactcttac |
343 |
Q |
| |
|
||||||||||||| |||||| |
|
|
| T |
39866362 |
-atcatcagttacagtcttac |
39866343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 40 - 343
Target Start/End: Complemental strand, 39849658 - 39849329
Alignment:
| Q |
40 |
agaaatggcagagactcacttgtacactatgataaaggtgttccaagcttgctttcctaga-attttgttttgtttgtgtctttagaaacatgctgttaa |
138 |
Q |
| |
|
|||||||||||| | | ||||||||||||| |||||||||||| | |||||||| |||||| || |||||||||||||||||||| ||||||||| |||| |
|
|
| T |
39849658 |
agaaatggcagaaaataacttgtacactattataaaggtgttctatgcttgcttccctagatatgttgttttgtttgtgtctttaaaaacatgctcttaa |
39849559 |
T |
|
| Q |
139 |
ttgctcaatcagattgtatttttatttat--------------ttatactgataacat-----------ataatacttctaaggtggtacgagatgaaga |
213 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||||| | |||||||||| |||||||||||||||| || |
|
|
| T |
39849558 |
ttgctcaatcagattgtatttatatttatatatttatatttatttatactgataacttgataagatattataatacttcctaggtggtacgagatgagga |
39849459 |
T |
|
| Q |
214 |
ccttgcagaacaaattggaaatgatatatattttgatctcgtagaccttgacaaagtgaggagtttccgtgttgaaaagcagacgtcatttaacgttttc |
313 |
Q |
| |
|
| ||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||| |||| |||||||||||| |
|
|
| T |
39849458 |
ctttgcagaacaaattggaaatgatttatattttgatcttgtagaccttgataaagtgaggagtttccgtgttcaaaagcaggcgtcgtttaacgttttc |
39849359 |
T |
|
| Q |
314 |
aaggtatcatatcatcagttacactcttac |
343 |
Q |
| |
|
|||||||| ||||||| ||||| ||||||| |
|
|
| T |
39849358 |
aaggtatcgtatcatcggttactctcttac |
39849329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 37 - 296
Target Start/End: Complemental strand, 39869349 - 39869096
Alignment:
| Q |
37 |
taaagaaatggcagagactcacttgtacactatgataaaggtgttccaagcttgctttcctagaattttgttttgtttgtgtctttagaaacatgctgtt |
136 |
Q |
| |
|
|||||||||||||||||||||| | |||| | | ||||||||||| ||||| ||||||| |||| ||| |||||||||| ||||||| |||||||||| |
|
|
| T |
39869349 |
taaagaaatggcagagactcacctctacatttttataaaggtgttgtaagctggctttccgagaaatttattttgtttgt--ctttagagacatgctgtt |
39869252 |
T |
|
| Q |
137 |
aattgctcaatcagattgtatttttatttatttatactgataacatataatacttctaaggtggtacgagatgaagaccttgcagaacaaattggaaatg |
236 |
Q |
| |
|
|| | | |||||||||| ||| | | || || |||||||||||||||||||||| |||| ||||||||||||||||| |||||||| |||||||| | |
|
|
| T |
39869251 |
aacttcccaatcagattatatctatgttaat----actgataacatataatacttcttaggtagtacgagatgaagacctggcagaacagattggaaagg |
39869156 |
T |
|
| Q |
237 |
atatatattttgatctcgtagaccttgacaaagtgaggagtttccgtgttgaaaagcaga |
296 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||| |||||||| ||||||||| |||| |
|
|
| T |
39869155 |
atatatgttttgatctcgtagaccttggaaaagtggggagtttctatgttgaaaaacaga |
39869096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 37 - 323
Target Start/End: Original strand, 38967075 - 38967353
Alignment:
| Q |
37 |
taaagaaatggcagagactcacttgtacactatgataaaggtgttccaagcttgctttcctagaattttgttttgtttgtgtctttagaaacatgc-tgt |
135 |
Q |
| |
|
|||||||| ||||||| |||| | |||||||| |||||||||||| || | |||||| |||||| || | || || |||||||||||||| | | ||| |
|
|
| T |
38967075 |
taaagaaaaggcagaggctcatctctacactattataaaggtgttctaaacatgctttactagaaattaatattattagtgtctttagaaactttcatgt |
38967174 |
T |
|
| Q |
136 |
taattgctcaatcagattgtatttttatttatttatactgataacatataatacttctaaggtggtacgagatgaagaccttgcagaacaaattggaaat |
235 |
Q |
| |
|
||||||||||||| | ||| ||||| |||||| ||||| |||||||||||| |||||| ||| |||||||||||||||||||| || ||||| |
|
|
| T |
38967175 |
caattgctcaatcataatgt---tttat--atttatgttgata---tataatacttcttaggtggcacgggatgaagaccttgcagaacagataggaaag |
38967266 |
T |
|
| Q |
236 |
gatatatattttgatctcgtagaccttgacaaagtgaggagtttccgtgttgaaaagcagacgtcatttaacgttttcaaggtatcat |
323 |
Q |
| |
|
||||| ||||||||||| ||||||| |||||| ||||| |||||||||||| | |||||||| || ||| |||||||||||||||||| |
|
|
| T |
38967267 |
gatatgtattttgatcttgtagaccatgacaatgtgagcagtttccgtgttcagaagcagacatc-tttcacgttttcaaggtatcat |
38967353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 172 - 323
Target Start/End: Complemental strand, 37467827 - 37467679
Alignment:
| Q |
172 |
actgataacatataatacttctaaggtggtacgagatgaagaccttgcagaacaaattggaaatgatatatattttgatctcgtagaccttgacaaagtg |
271 |
Q |
| |
|
||||||||||||| |||||| |||||| ||| |||||||| |||| |||||| |||||||| ||||||||||||||||| ||||| | |||||||||| |
|
|
| T |
37467827 |
actgataacatatgatactt---aggtggcacgggatgaagatcttggagaacagattggaaaggatatatattttgatcttgtagaacatgacaaagtg |
37467731 |
T |
|
| Q |
272 |
aggagtttccgtgttgaaaagcagacgtcatttaacgttttcaaggtatcat |
323 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
37467730 |
cggagtttccgtgtacaaaagcagacaccatttaacgttttcaaggtatcat |
37467679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 48 - 323
Target Start/End: Original strand, 39734556 - 39734815
Alignment:
| Q |
48 |
cagagactcacttgtacactatgataaaggtgttccaagcttgctttcctagaattttgttttgtttgtgtctttagaaacatgctgttaattgctcaat |
147 |
Q |
| |
|
||||| ||||| | |||||||| |||| ||||||| |||||||||| ||||||| | || ||||||| |||||||| ||| ||||||||||||||| |
|
|
| T |
39734556 |
cagaggctcacctctacactattataagggtgttctaagcttgcttccctagaaactagtaatgtttgtttctttagattcatcttgttaattgctcaat |
39734655 |
T |
|
| Q |
148 |
cagattgtatttttatttatttatactgataacatataatacttctaaggtggtacgagatgaagaccttgcagaacaaattggaaatgatatatatttt |
247 |
Q |
| |
|
|||||||||||| | ||||| ||||||||| || ||||||||||||||||||||||||| |||| |||||||| |||||||||||| |
|
|
| T |
39734656 |
cagattgtatttatgtttat----actgataactta------------ggtggtacgagatgaagaccttgcacaacagattggaaaggatatatatttt |
39734739 |
T |
|
| Q |
248 |
gatctcgtagaccttgacaaagtgaggagtttccgtgttgaaaagcagacgtcatttaacgttttcaaggtatcat |
323 |
Q |
| |
|
||||| || |||| |||||||||||| ||||| |||||| ||| | ||| ||||||| | |||||||||||||| |
|
|
| T |
39734740 |
gatcttgttgaccctgacaaagtgagcagttttcgtgttcccaagaatacgacatttaaagatttcaaggtatcat |
39734815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 186 - 323
Target Start/End: Complemental strand, 39899837 - 39899700
Alignment:
| Q |
186 |
atacttctaaggtggtacgagatgaagaccttgcagaacaaattggaaatgatatatattttgatctcgtagaccttgacaaagtgaggagtttccgtgt |
285 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||| |||| |||||||| ||||||||||||||||| ||||||| |||||||||| ||| |||| ||| |
|
|
| T |
39899837 |
atacttcttaggtggtacgagacgaagaccttgcaaaacagattggaaaggatatatattttgatcttgtagaccatgacaaagtggggattttctatgt |
39899738 |
T |
|
| Q |
286 |
tgaaaagcagacgtcatttaacgttttcaaggtatcat |
323 |
Q |
| |
|
| ||| ||||| |||||||||| ||| |||||||||| |
|
|
| T |
39899737 |
tcaaaggcagaaatcatttaacgatttaaaggtatcat |
39899700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 41 - 155
Target Start/End: Complemental strand, 37467993 - 37467879
Alignment:
| Q |
41 |
gaaatggcagagactcacttgtacactatgataaaggtgttccaagcttgctttcctagaattttgttttgtttgtgtctttagaaacatgctgttaatt |
140 |
Q |
| |
|
|||| ||||||| ||||| | |||||||| |||||||||||| ||||| ||||||||||||| || ||||||||||||||| ||| ||||||| |||| |
|
|
| T |
37467993 |
gaaaaggcagaggctcacctctacactattataaaggtgttcttagcttcctttcctagaattgagtattgtttgtgtctttataaagatgctgtgaatt |
37467894 |
T |
|
| Q |
141 |
gctcaatcagattgt |
155 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
37467893 |
tctctatcagattgt |
37467879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 288 - 323
Target Start/End: Original strand, 39727642 - 39727677
Alignment:
| Q |
288 |
aaaagcagacgtcatttaacgttttcaaggtatcat |
323 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |
|
|
| T |
39727642 |
aaaagcagacgtcatttaatgttttcaaggtatcat |
39727677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 195 - 322
Target Start/End: Original strand, 36057877 - 36058004
Alignment:
| Q |
195 |
aggtggtacgagatgaagaccttgcagaacaaattggaaatgatatatattttgatctcgtagaccttgacaaagtgaggagtttccgtgttgaaaagca |
294 |
Q |
| |
|
|||||| ||| ||||||||| ||| || || || ||||| ||||| || |||||||| ||||||| ||||||||||| ||||||||||| ||||||| |
|
|
| T |
36057877 |
aggtggcacgggatgaagacattgaagggcagatgggaaaggatatctactttgatcttgtagaccacgacaaagtgagaagtttccgtgtacaaaagca |
36057976 |
T |
|
| Q |
295 |
gacgtcatttaacgttttcaaggtatca |
322 |
Q |
| |
|
||| | ||||| ||||||||||||||| |
|
|
| T |
36057977 |
gacaccttttaatgttttcaaggtatca |
36058004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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