View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9356_low_13 (Length: 349)
Name: NF9356_low_13
Description: NF9356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9356_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 8 - 332
Target Start/End: Complemental strand, 23755279 - 23754952
Alignment:
| Q |
8 |
caaaacgaagggaaaatgacgactcctgcaa-ttgaatctgacatcaaagtttccctattcttgtgaaaatattgaaaagcaaatatatgactcaacagt |
106 |
Q |
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|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23755279 |
caaaacaaagggaaaatgacgactcctgcaaattgaatctgacatcaaagtttccctattcttgtgaaaatattgaaaagcaaatatatgactcaacagg |
23755180 |
T |
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| Q |
107 |
tcaggtacatttttgactaaccataattcacttctagaattttcacctcaagtcatactattactaattagcactcataaattttcaaatggtgggtctg |
206 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
23755179 |
tcaggtacacttttgactaaccataattcacttctagaattttcacctcaagtcatactattactaattatcattcataaattttcaaatggtgggtctg |
23755080 |
T |
|
| Q |
207 |
--nnnnnnnncttataattgttatgattgtggggttgcatttcatcgtcatatcgttttctctgatgatcatatgtatatttcattattttcttctcacc |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23755079 |
ttttttttttcttataattgttatgattgtggggttgcatttcatcgtcatatcgttttctctgatgatcatatgtatatttcattattttcttctcacc |
23754980 |
T |
|
| Q |
305 |
cactgaatgcaaggattgggatggcaac |
332 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
23754979 |
cactgaatgcaaggattgggatggcaac |
23754952 |
T |
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