View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9356_low_14 (Length: 338)
Name: NF9356_low_14
Description: NF9356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9356_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 40940830 - 40940504
Alignment:
| Q |
1 |
aatttcgtttaattctctgcttcacgtctagtcctgtccatgacattctccatttcagagtaagtatgcgtacgcagaactttatcctgcattttctcaa |
100 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||| ||||||||||||| |
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| T |
40940830 |
aatttccttgaattctctgcttcacgtctagtcctgtccatgacattctccatttcagcgtaagta------cggagaactttatcttgcattttctcaa |
40940737 |
T |
|
| Q |
101 |
tttcttttttctttagtttcaaacgttcttccttctcagctatgagcttaatcaaatcatccctggatagacctgattcactatctgaatctgaatcaga |
200 |
Q |
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| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
40940736 |
tctcttttttctttagtttcaaaagttcttccttctcagctacaagcttaatcaaatcatccctggatagatccgattcactatctgaatctgaatcaga |
40940637 |
T |
|
| Q |
201 |
gaaagaagttcgtttaatactcctcctccttcttttgacagtttgagaatgagaatctgctgaaatagaacctgattcttctgtttgatctgcagacttg |
300 |
Q |
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|||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40940636 |
aaaagcagttcgtttaatactcctcctcctccttttgacagtttgagaatgtgaatctgctgaaatagaacctgattcttctgtttgatctgcagacttg |
40940537 |
T |
|
| Q |
301 |
gcttgtccaggctgatcaatttcctttgcttct |
333 |
Q |
| |
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||||||||||||||||||||||||| ||||||| |
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| T |
40940536 |
gcttgtccaggctgatcaatttcctctgcttct |
40940504 |
T |
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