View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9356_low_21 (Length: 292)
Name: NF9356_low_21
Description: NF9356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9356_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 280
Target Start/End: Complemental strand, 5276789 - 5276525
Alignment:
| Q |
17 |
tgggtttcactgatttgttcaatcaactccttcctacaatgccttggaattctgttatggtatgctttttattcctttcatgtgctctgttttctaaaat |
116 |
Q |
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| T |
5276789 |
tgggtttcactgatttgttcaatcaactccttcctacaatgccttggaattctgttatggtatgctttttattcctttcatgtgctctgttttgtaaaat |
5276690 |
T |
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| Q |
117 |
actctgtttttcattcatttgaaattctgcattgtctct--tatatatgattaacttgtttggttttggaattgtaggacaaaatgatgatggagtttca |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5276689 |
actctgtttttcattcatttgaaattctgcattgtctctaatatatgtgattaactt-tttggttttggaattgtaggacaaaatgatgatggagtttca |
5276591 |
T |
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| Q |
215 |
ttcaaatggaataaccattgaagagattgaaaaagttcttcaaaggataccaattcatcacagaat |
280 |
Q |
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| T |
5276590 |
ttcaaatggaataaccattgaagagattgaaaaggttcttcaaaggattccaattcatcacagaat |
5276525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 19 - 280
Target Start/End: Original strand, 5268967 - 5269235
Alignment:
| Q |
19 |
ggtttcactgatttgttcaatcaactccttcctacaatgccttggaattctgttatggtatgctttttattcctttcatgtgctctgttttctaaaatac |
118 |
Q |
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| T |
5268967 |
ggtttcaccgatttgttcaatcaactccttcccactatgcctttcaattctctcatggtatgtttttcactcttttcatatgctctgtttttaaaaatac |
5269066 |
T |
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| Q |
119 |
tctgtttttcattcatttgaaattctgcattgtctctt----atatatgattaacttgt---ttggttttggaattgtaggacaaaatgatgatggagtt |
211 |
Q |
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| T |
5269067 |
tctgtttttcattcactcgatattctgaatattatatttataacaaataattaacttgtgttttggttttggaaatacaggacagaatgatgatggagct |
5269166 |
T |
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| Q |
212 |
tcattcaaatggaataaccattgaagagattgaaaaagttcttcaaaggataccaattcatcacagaat |
280 |
Q |
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| T |
5269167 |
tcattcaaatggaaaaagtatcgaagatattgaaaaagttcttcaaaggataccaattaatcacagaat |
5269235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 173 - 280
Target Start/End: Complemental strand, 5272653 - 5272546
Alignment:
| Q |
173 |
tttggttttggaattgtaggacaaaatgatgatggagtttcattcaaatggaataaccattgaagagattgaaaaagttcttcaaaggataccaattcat |
272 |
Q |
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| T |
5272653 |
tttggttttgaaattataggacaaaatgatgatggaatttcattcaaatggtgtaaccattgaagagattgaaaaggttcttcaaaggattccaattcat |
5272554 |
T |
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| Q |
273 |
cacagaat |
280 |
Q |
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|||||||| |
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| T |
5272553 |
cacagaat |
5272546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 198 - 280
Target Start/End: Original strand, 5249933 - 5250015
Alignment:
| Q |
198 |
atgatgatggagtttcattcaaatggaataaccattgaagagattgaaaaagttcttcaaaggataccaattcatcacagaat |
280 |
Q |
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| T |
5249933 |
atgatgatggagattcattcaaatggtaaaaccattgaagagattgaaaaagttcttcaaaggataccaattcatcacagaat |
5250015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 5249730 - 5249823
Alignment:
| Q |
17 |
tgggtttcactgatttgttcaatcaactccttcctacaatgccttggaattctgttatggtatg-ctttttattcctttcatgtgctctgtttt |
109 |
Q |
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||||||||||||||||||||||||| |||||||| || ||||||||||||||| | |||||||| ||||| |||| ||||||| ||||||||| |
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| T |
5249730 |
tgggtttcactgatttgttcaatcagctccttcccactatgccttggaattctctcatggtatgtttttttgttcccttcatgtactctgtttt |
5249823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 5272818 - 5272745
Alignment:
| Q |
17 |
tgggtttcactgatttgttcaatcaactccttcctacaatgccttggaattctgttatggtatgctttttattc |
90 |
Q |
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|||||||||| |||||||||||||| |||||||| ||||||||||||||||| || |||||||| ||||||||| |
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| T |
5272818 |
tgggtttcaccgatttgttcaatcagctccttcccacaatgccttggaattccgtcatggtatgttttttattc |
5272745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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