View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9356_low_24 (Length: 291)
Name: NF9356_low_24
Description: NF9356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9356_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 281
Target Start/End: Original strand, 48754395 - 48754658
Alignment:
| Q |
18 |
gtttaatgtggattggatctatgattgcgtagttgtgaatcaatgttacttaatttggccaaacttaatccagattttcattgcaatacctgtgtatctg |
117 |
Q |
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| T |
48754395 |
gtttaatgtggattggatctatgattgcgtagttgtgaatcaatgttacttaatttggccaaacttaatccagatttacattgcaatacctgtgtatctg |
48754494 |
T |
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| Q |
118 |
aatttgctgggtaacccttattgaaaccctgaaggaataaatagagggtgggatattttgttctagccgtacaaatttgagagctgcaggatttcagctg |
217 |
Q |
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| T |
48754495 |
aatttgctgggtaacccttattgaaaccctgaaggaataaatagagggtgggatattttgttctagccgtacaaatttgagagctgcaggatttcagctg |
48754594 |
T |
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| Q |
218 |
ggactgacgagattttgactcgatttcattttgtatttgtttattgtggtgtgttatctctctg |
281 |
Q |
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| T |
48754595 |
ggactgacgagattttgactcgatttcattttttatttgtttattgtggtgtgttgtctctctg |
48754658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 72 - 212
Target Start/End: Original strand, 49053124 - 49053265
Alignment:
| Q |
72 |
ttggccaaacttaatccagattttcattgcaatacctgtgtatctgaatttgctgggtaacccttattgaaaccctgaaggaataaatagagggt-ggga |
170 |
Q |
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| T |
49053124 |
ttggccaaacttgattcagaaattgattgcaatacctgtgtatctgagtttgttgggtaacccttattgagactctgaaggaaaaaatagagggtgggga |
49053223 |
T |
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| Q |
171 |
tattttgttctagccgtacaaatttgagagctgcaggatttc |
212 |
Q |
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| T |
49053224 |
tattttgttctagctgtacaaattcgagacctgcagggtttc |
49053265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 220
Target Start/End: Original strand, 29031626 - 29031700
Alignment:
| Q |
146 |
ctgaaggaataaatagagggtgggatattttgttctagccgtacaaatttgagagctgcaggatttcagctggga |
220 |
Q |
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| T |
29031626 |
ctgaaggaaagaaaagagggtgagatattttgttctagcagtccaaattcgagagctgtagggtttcatctggga |
29031700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 35914688 - 35914736
Alignment:
| Q |
31 |
tggatctatgattgcgtagttgtgaatcaatgttacttaatttggccaa |
79 |
Q |
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| T |
35914688 |
tggatctttgattgcttagttgtgaatcaatgttctttagtttggccaa |
35914736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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