View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9356_low_29 (Length: 250)
Name: NF9356_low_29
Description: NF9356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9356_low_29 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 16659098 - 16659338
Alignment:
| Q |
1 |
taatcatagttttgatcatagcctagttttggtttcactttctaatgaaattacttgtttaagtctttgtggtaaattcttggaggaatctactgattaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16659098 |
taatcatagttttgatcatagcctagtgatggtttcactttctaatgaaattacttgtttaagtctttgtggtaaattcttggaggaatctactgattaa |
16659197 |
T |
|
| Q |
101 |
ttttatgtgaaatatagtattattgatgtaggactaaactttttacatcttaaactgctccaaattgaaagctaatggagtggaatggatgatgactcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16659198 |
ttttatgtgaaatatagtattattgatgtaggactaaactttttacatcttaaactgctccaaattgaaagctaatggagtggaatggatgatgactcaa |
16659297 |
T |
|
| Q |
201 |
gtttgtgaatannnnnnnagtatttataatagtgtctctgc |
241 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
16659298 |
gtttgtgaatatttttttagtatttataagagtgtctctgc |
16659338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 1668383 - 1668584
Alignment:
| Q |
1 |
taatcatagttttgatcatagcctagttttggtttcactttctaatgaaattacttgtttaagtctttgtggtaaattcttggaggaatctactgattaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1668383 |
taatcatagttttgatcatagcctagtgatggtttcactttctaatgaaattacttgtttaagtctttgtggtaaattcttggaggaatctactgattaa |
1668482 |
T |
|
| Q |
101 |
ttttatgtgaaatatagtattattgatgtaggactaaactttttacatcttaaactgctccaaattgaaagctaatggagtggaatggatgatgactcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1668483 |
ttttatgtgaaatatagtattattgatgtaggactaaactttttacatcttaaactgctccaaattgaaagctaatggagtggaatggatgatgactcaa |
1668582 |
T |
|
| Q |
201 |
gt |
202 |
Q |
| |
|
|| |
|
|
| T |
1668583 |
gt |
1668584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 38521067 - 38520867
Alignment:
| Q |
1 |
taatcatagttttgatcatagcctagttttggtttcactttctaatgaaattacttgtttaagtctttgtggtaaattcttggaggaatctactgattaa |
100 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38521067 |
taatcatagttttaatcatagcctagtgatggtttcactttctaatgaaattacttgtttaagtctttgtggtaaattcttggaggaatctactgattaa |
38520968 |
T |
|
| Q |
101 |
ttttatgtgaaatatagtattattgatgtaggactaaactttttacatcttaaactgctccaaattgaaagctaatggagtggaatggatgatgactcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38520967 |
ttttatgtgaaatatagtattattgatgtaggactaaactttttacatcttaaactgctccaaattgaaagctaatggagtggaatggatgatgactcaa |
38520868 |
T |
|
| Q |
201 |
g |
201 |
Q |
| |
|
| |
|
|
| T |
38520867 |
g |
38520867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 22015113 - 22015352
Alignment:
| Q |
1 |
taatcatagttttgatcatagcctagttttggtttcactttctaatgaaattacttgtttaagtctttgtggtaaattcttggaggaatctactgattaa |
100 |
Q |
| |
|
||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
22015113 |
taatcatagttttaatcatagcctagtgatagtttcactttctaatgaaattacttgtttaagtctttgtggtaaaatcttggaggaatctactgattaa |
22015212 |
T |
|
| Q |
101 |
ttttatgtgaaatatagtattattgatgtaggactaaactttttacatcttaaactgctccaaattgaaagctaatggagtggaatggatgatgactcaa |
200 |
Q |
| |
|
||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
22015213 |
ttt-atgtgaaacatagtattattgatgtaggactaaactttttacatcttaaactgctccaaattgaaagccaatggagtggaatggatgatgactcaa |
22015311 |
T |
|
| Q |
201 |
gtttgtgaatannnnnnnagtatttataatagtgtctctgc |
241 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
22015312 |
gtttgtgaatatttttttagtatttataagagtgtctctgc |
22015352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 3935213 - 3934973
Alignment:
| Q |
1 |
taatcatagttttgatcatagcctagttttggtttcactttctaatgaaattacttgtttaagtctttgtggtaaattcttggaggaatctactgattaa |
100 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3935213 |
taatcatagttttaatcatagcctagtgatggtttcactttctaatgaaactacttgtttaagtctttgtggtaaattcttggaggaatctactgattaa |
3935114 |
T |
|
| Q |
101 |
ttttatgtgaaatatagtattattgatgtaggactaaactttttacatcttaaactgctccaaattgaaagctaatggagtggaatggatgatgactcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3935113 |
ttttatgtgaaatatagtattattgatgtaggactaaactttttacatcttaaactgctccaaattgaaagctaatggagtggaatggatgatgactcaa |
3935014 |
T |
|
| Q |
201 |
gtttgtgaatannnnnnnagtatttataatagtgtctctgc |
241 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
3935013 |
gtttgtgaatatttttttagtatttataagagtgtctctgc |
3934973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 43189217 - 43189428
Alignment:
| Q |
1 |
taatcatagttttgatcatagcctagttttggtttcactttctaatgaaattacttgtttaagtcttt-gtggtaaattcttggaggaatctactgatta |
99 |
Q |
| |
|
||||||| ||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
43189217 |
taatcatggttttaatcatagcctagtgatggtttcactttctaatgaaat-acttgtttaagtcttttgtggtaaattcttggaggaatctactgatta |
43189315 |
T |
|
| Q |
100 |
attttatgtgaaatatagtattattgatgtaggactaaactttttacatcttaaactgctccaaattgaaag-ctaatggagtggaatggatgatgactc |
198 |
Q |
| |
|
||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
43189316 |
attatatgtgaagtatagtattattgatgtaggagtaaactttttacatcttaaactgctccaaattcaaagtttaatggagtggaatggatgatgactc |
43189415 |
T |
|
| Q |
199 |
aagtttgtgaata |
211 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
43189416 |
aaatttgtgaata |
43189428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 38978247 - 38978178
Alignment:
| Q |
1 |
taatcatagttttgatcatagcctagttttggtttcactttctaatgaaattacttgtttaagtctttgt |
70 |
Q |
| |
|
||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
38978247 |
taatcgtagttttaatcatagcctagtgatggtttcactttctaatgaaattacttggttaagtctttgt |
38978178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 52893687 - 52893897
Alignment:
| Q |
1 |
taatcatagttttgatcatagcctagttttggtttcactttctaatgaaattacttgtttaagtctttgtggtaaattcttggaggaatctactgattaa |
100 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52893687 |
taatcatagttttaatcatagcctagtgatggtttcactttctaatgaaattacttggttaagtctttgtggtaaattcttggaggaatctactgattaa |
52893786 |
T |
|
| Q |
101 |
ttttatgtgaaatatagtattattgatgtaggactaaactttttacatcttaaactgctccaaattgaaagctaatggagtggaatggatgatgactcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
52893787 |
ttttatgtgaaatatagtattattgatgtaggactaaactttttacatcttaaactgctccaaattgaaagccaatggagtggaatggatgatgactcaa |
52893886 |
T |
|
| Q |
201 |
gtttgtgaata |
211 |
Q |
| |
|
||||||||||| |
|
|
| T |
52893887 |
gtttgtgaata |
52893897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 2338657 - 2338457
Alignment:
| Q |
1 |
taatcatagttttgatcatagcctagttttggtttcactttctaatgaaattacttgtttaagtctttgtggtaaattcttggaggaatctactgattaa |
100 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2338657 |
taatcatagttttaatcatagcctagtgatggtttcactttctaatgaaattacttgtttaagtctttgtggtaaattcttggaggaatctactgattaa |
2338558 |
T |
|
| Q |
101 |
ttttatgtgaaatatagtattattgatgtaggactaaactttttacatcttaaactgctccaaattgaaagctaatggagtggaatggatgatgactcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2338557 |
ttttatgtgaaatatagtattattgatgtaggactaaactttttacatcttaaactgctccaaattgaaagctaatggagtggaatggatgatgactcaa |
2338458 |
T |
|
| Q |
201 |
g |
201 |
Q |
| |
|
| |
|
|
| T |
2338457 |
g |
2338457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 23218061 - 23217861
Alignment:
| Q |
1 |
taatcatagttttgatcatagcctagttttggtttcactttctaatgaaattacttgtttaagtctttgtggtaaattcttggaggaatctactgattaa |
100 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23218061 |
taatcatagttttaatcatagcctagtgatggtttcactttctaatgaaattacttgtttaagtctttgtggtaaattcttggaggaatctactgattaa |
23217962 |
T |
|
| Q |
101 |
ttttatgtgaaatatagtattattgatgtaggactaaactttttacatcttaaactgctccaaattgaaagctaatggagtggaatggatgatgactcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23217961 |
ttttatgtgaaatatagtattattgatgtaggactaaactttttacatcttaaactgctccaaattgaaagctaatggagtggaatggatgatgactcaa |
23217862 |
T |
|
| Q |
201 |
g |
201 |
Q |
| |
|
| |
|
|
| T |
23217861 |
g |
23217861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 45144228 - 45144468
Alignment:
| Q |
1 |
taatcatagttttgatcatagcctagttttggtttcactttctaatgaaattacttgtttaagtctttgtggtaaattcttggaggaatctactgattaa |
100 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45144228 |
taatcatagttttaatcatagcctagtgatggtttcactttctaatgaaattacttagttaagtctttgtggtaaattcttggaggaatctactgattaa |
45144327 |
T |
|
| Q |
101 |
ttttatgtgaaatatagtattattgatgtaggactaaactttttacatcttaaactgctccaaattgaaagctaatggagtggaatggatgatgactcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
45144328 |
ttttatgtgaaatatagtattattgatgcaggactaaattttttacatcttaaactgcttcaaattgaaatccaatggagtggaatggatgatgactcaa |
45144427 |
T |
|
| Q |
201 |
gtttgtgaatannnnnnnagtatttataatagtgtctctgc |
241 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
45144428 |
gtttgtgaatatttttttagtatttataagagtgtctctgc |
45144468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 45152997 - 45153237
Alignment:
| Q |
1 |
taatcatagttttgatcatagcctagttttggtttcactttctaatgaaattacttgtttaagtctttgtggtaaattcttggaggaatctactgattaa |
100 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45152997 |
taatcatagttttaatcatagcctagtgatggtttcactttctaatgaaattacttaattaagtctttgtggtaaattcttggaggaatctactgattaa |
45153096 |
T |
|
| Q |
101 |
ttttatgtgaaatatagtattattgatgtaggactaaactttttacatcttaaactgctccaaattgaaagctaatggagtggaatggatgatgactcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
45153097 |
ttttatgtgaaatatagtattattgatgcaggactaaattttttacatcttaaactgcttcaaattgaaatccaatggagtggaatggatgatgactcaa |
45153196 |
T |
|
| Q |
201 |
gtttgtgaatannnnnnnagtatttataatagtgtctctgc |
241 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
45153197 |
gtttgtgaatatttttttagtatttataagagtgtctctgc |
45153237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 3174442 - 3174682
Alignment:
| Q |
1 |
taatcatagttttgatcatagcctagttttggtttcactttctaatgaaattacttgtttaagtctttgtggtaaattcttggaggaatctactgattaa |
100 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3174442 |
taatcatagttttaatcatagcctagtgatggtttcactttctaaagaaattacttgtttaagtctttgtgttaaattcttggaggaatctactgattaa |
3174541 |
T |
|
| Q |
101 |
ttttatgtgaaatatagtattattgatgtaggactaaactttttacatcttaaactgctccaaattgaaagctaatggagtggaatggatgatgactcaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
3174542 |
ttttatgtgaaatatagtattattgatgtaggactaaactttttacatcttaaactgctcccaattgaaagccaatggaatggaatggatgatgactcaa |
3174641 |
T |
|
| Q |
201 |
gtttgtgaatannnnnnnagtatttataatagtgtctctgc |
241 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
3174642 |
gtttgtgaatatttttttagtatttataagagtgtctctgc |
3174682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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