View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9356_low_30 (Length: 249)

Name: NF9356_low_30
Description: NF9356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9356_low_30
NF9356_low_30
[»] scaffold0054 (1 HSPs)
scaffold0054 (197-240)||(45688-45731)
[»] chr8 (11 HSPs)
chr8 (197-240)||(40918730-40918773)
chr8 (198-240)||(7147148-7147190)
chr8 (198-240)||(11646325-11646367)
chr8 (198-240)||(30999524-30999566)
chr8 (198-240)||(36068315-36068357)
chr8 (198-240)||(40058303-40058345)
chr8 (198-240)||(43275399-43275441)
chr8 (197-240)||(37345806-37345849)
chr8 (198-240)||(2539930-2539972)
chr8 (198-240)||(3585686-3585728)
chr8 (198-240)||(11174223-11174265)
[»] chr4 (13 HSPs)
chr4 (197-240)||(12071795-12071838)
chr4 (198-240)||(14261279-14261321)
chr4 (198-240)||(21310656-21310698)
chr4 (198-240)||(24706247-24706289)
chr4 (198-240)||(25704886-25704928)
chr4 (198-240)||(44569072-44569114)
chr4 (200-240)||(21661537-21661577)
chr4 (200-240)||(21670301-21670341)
chr4 (198-240)||(22321268-22321310)
chr4 (198-240)||(40122487-40122529)
chr4 (199-240)||(21064996-21065037)
chr4 (198-240)||(20249014-20249056)
chr4 (208-240)||(50768097-50768129)
[»] chr7 (6 HSPs)
chr7 (198-240)||(27814046-27814088)
chr7 (198-240)||(40349196-40349238)
chr7 (198-240)||(25614353-25614395)
chr7 (198-240)||(36453124-36453166)
chr7 (198-240)||(10981743-10981785)
chr7 (198-240)||(47110685-47110727)
[»] chr6 (9 HSPs)
chr6 (198-240)||(1605813-1605855)
chr6 (198-240)||(7761535-7761577)
chr6 (198-240)||(8626717-8626759)
chr6 (198-240)||(29260427-29260469)
chr6 (197-240)||(4129661-4129704)
chr6 (198-240)||(13757442-13757484)
chr6 (198-240)||(15064695-15064737)
chr6 (198-240)||(17942678-17942720)
chr6 (198-240)||(31559738-31559780)
[»] chr5 (8 HSPs)
chr5 (198-240)||(12806853-12806895)
chr5 (198-240)||(30720492-30720534)
chr5 (198-240)||(36561099-36561141)
chr5 (198-240)||(40886610-40886652)
chr5 (198-240)||(25683229-25683271)
chr5 (198-239)||(25773885-25773926)
chr5 (198-240)||(10285058-10285100)
chr5 (198-240)||(23097724-23097766)
[»] chr3 (6 HSPs)
chr3 (198-240)||(13365078-13365120)
chr3 (198-240)||(19241668-19241710)
chr3 (198-240)||(29375367-29375409)
chr3 (198-240)||(36881515-36881557)
chr3 (198-240)||(46694110-46694152)
chr3 (197-240)||(32834988-32835031)
[»] chr2 (9 HSPs)
chr2 (198-240)||(22388138-22388180)
chr2 (198-240)||(23367024-23367066)
chr2 (197-240)||(12969739-12969782)
chr2 (198-240)||(1102736-1102778)
chr2 (198-240)||(1646522-1646564)
chr2 (198-240)||(3519142-3519184)
chr2 (197-239)||(37673742-37673784)
chr2 (198-240)||(39938405-39938447)
chr2 (198-240)||(40756911-40756953)
[»] chr1 (8 HSPs)
chr1 (198-240)||(284568-284610)
chr1 (198-240)||(23045279-23045321)
chr1 (198-240)||(24771906-24771948)
chr1 (198-240)||(40783657-40783699)
chr1 (197-238)||(321863-321904)
chr1 (198-240)||(33082979-33083021)
chr1 (198-240)||(23526474-23526516)
chr1 (198-240)||(47037852-47037894)
[»] scaffold1770 (1 HSPs)
scaffold1770 (197-240)||(396-439)


Alignment Details
Target: scaffold0054 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 197 - 240
Target Start/End: Complemental strand, 45731 - 45688
Alignment:
Q  197 ttactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  45731 ttactccctccgtttcataatacttgtccattttagagaataat 45688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 197 - 240
Target Start/End: Original strand, 40918730 - 40918773
Alignment:
Q  197 ttactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  40918730 ttactccctccgtttcataatacttgtccattttagagaataat 40918773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 7147190 - 7147148
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  7147190 tactccctccgtttcataatacttgtccattttagagaataat 7147148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 11646325 - 11646367
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  11646325 tactccctccgtttcataatacttgtccattttagagaataat 11646367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 30999524 - 30999566
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  30999524 tactccctccgtttcataatacttgtccattttagagaataat 30999566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 36068357 - 36068315
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  36068357 tactccctccgtttcataatacttgtccattttagagaataat 36068315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 40058303 - 40058345
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  40058303 tactccctccgtttcataatacttgtccattttagagaataat 40058345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 43275399 - 43275441
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  43275399 tactccctccgtttcataatacttgtccattttagagaataat 43275441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 240
Target Start/End: Complemental strand, 37345849 - 37345806
Alignment:
Q  197 ttactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    ||||||| |||||||||||||||||||||| |||||||||||||    
T  37345849 ttactccttccgtttcataatacttgtccattttagagaataat 37345806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 2539930 - 2539972
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    |||||| |||||||||||||||||||||| |||| ||||||||    
T  2539930 tactccttccgtttcataatacttgtccattttaaagaataat 2539972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 3585728 - 3585686
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    |||||| |||||||||||||||||||| | |||||||||||||    
T  3585728 tactccatccgtttcataatacttgtctattttagagaataat 3585686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 11174223 - 11174265
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    |||||||||||||||||||||||||| || |||| ||||||||    
T  11174223 tactccctccgtttcataatacttgttcattttaaagaataat 11174265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 197 - 240
Target Start/End: Complemental strand, 12071838 - 12071795
Alignment:
Q  197 ttactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  12071838 ttactccctccgtttcataatacttgtccattttagagaataat 12071795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 14261321 - 14261279
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  14261321 tactccctccgtttcataatacttgtccattttagagaataat 14261279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 21310698 - 21310656
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  21310698 tactccctccgtttcataatacttgtccattttagagaataat 21310656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 24706247 - 24706289
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  24706247 tactccctccgtttcataatacttgtccattttagagaataat 24706289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 25704928 - 25704886
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  25704928 tactccctccgtttcataatacttgtccattttagagaataat 25704886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 44569114 - 44569072
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  44569114 tactccctccgtttcataatacttgtccattttagagaataat 44569072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 21661537 - 21661577
Alignment:
Q  200 ctccctccgtttcataatacttgtccaatttagagaataat 240  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  21661537 ctccctccgtttcataatacttgtccattttagagaataat 21661577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 21670301 - 21670341
Alignment:
Q  200 ctccctccgtttcataatacttgtccaatttagagaataat 240  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  21670301 ctccctccgtttcataatacttgtccattttagagaataat 21670341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 22321268 - 22321310
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    ||||||||||||||||||||||||||| | |||||||||||||    
T  22321268 tactccctccgtttcataatacttgtctattttagagaataat 22321310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 40122487 - 40122529
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    ||||| ||||||||||||||||||||||| |||||||||||||    
T  40122487 tactctctccgtttcataatacttgtccattttagagaataat 40122529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 21065037 - 21064996
Alignment:
Q  199 actccctccgtttcataatacttgtccaatttagagaataat 240  Q
    ||||||||||||||||||||||||| || |||||||||||||    
T  21065037 actccctccgtttcataatacttgttcattttagagaataat 21064996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 20249014 - 20249056
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    ||||| ||||||||||||||||||||||| ||| |||||||||    
T  20249014 tactcactccgtttcataatacttgtccattttggagaataat 20249056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 50768129 - 50768097
Alignment:
Q  208 gtttcataatacttgtccaatttagagaataat 240  Q
    ||||||||||||||||||| |||||||||||||    
T  50768129 gtttcataatacttgtccattttagagaataat 50768097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 27814088 - 27814046
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  27814088 tactccctccgtttcataatacttgtccattttagagaataat 27814046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 40349238 - 40349196
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  40349238 tactccctccgtttcataatacttgtccattttagagaataat 40349196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 25614353 - 25614395
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    ||||||||||||||||||||| ||||||| |||||||||||||    
T  25614353 tactccctccgtttcataataattgtccattttagagaataat 25614395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 36453124 - 36453166
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    ||||| ||||||||||||||||||||||| |||||||||||||    
T  36453124 tactctctccgtttcataatacttgtccattttagagaataat 36453166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 10981785 - 10981743
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    |||||||||| |||||||||| ||||||| |||||||||||||    
T  10981785 tactccctccatttcataatatttgtccattttagagaataat 10981743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 47110727 - 47110685
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    |||||||||||||||||||||||| | || |||||||||||||    
T  47110727 tactccctccgtttcataatacttattcattttagagaataat 47110685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 1605855 - 1605813
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  1605855 tactccctccgtttcataatacttgtccattttagagaataat 1605813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 7761577 - 7761535
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  7761577 tactccctccgtttcataatacttgtccattttagagaataat 7761535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 8626759 - 8626717
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  8626759 tactccctccgtttcataatacttgtccattttagagaataat 8626717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 29260469 - 29260427
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  29260469 tactccctccgtttcataatacttgtccattttagagaataat 29260427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 240
Target Start/End: Complemental strand, 4129704 - 4129661
Alignment:
Q  197 ttactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    |||||||||||||||||||||||||||||| |||||| ||||||    
T  4129704 ttactccctccgtttcataatacttgtccattttagaaaataat 4129661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 13757484 - 13757442
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    |||||| |||||||||||||||||||||| |||||||||||||    
T  13757484 tactccatccgtttcataatacttgtccattttagagaataat 13757442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 15064695 - 15064737
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    ||||||||||||||||||||||||||||| ||| |||||||||    
T  15064695 tactccctccgtttcataatacttgtccattttggagaataat 15064737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 17942720 - 17942678
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    ||||||||||||||||||||||||||||| ||| |||||||||    
T  17942720 tactccctccgtttcataatacttgtccattttggagaataat 17942678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 31559738 - 31559780
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    |||||||||||||||||||||||| |||| |||||||||||||    
T  31559738 tactccctccgtttcataatacttctccattttagagaataat 31559780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 12806853 - 12806895
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  12806853 tactccctccgtttcataatacttgtccattttagagaataat 12806895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 30720492 - 30720534
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  30720492 tactccctccgtttcataatacttgtccattttagagaataat 30720534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 36561099 - 36561141
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  36561099 tactccctccgtttcataatacttgtccattttagagaataat 36561141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 40886610 - 40886652
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  40886610 tactccctccgtttcataatacttgtccattttagagaataat 40886652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 25683229 - 25683271
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    ||||||||||||||||||||||||||||| ||| |||||||||    
T  25683229 tactccctccgtttcataatacttgtccattttggagaataat 25683271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 198 - 239
Target Start/End: Complemental strand, 25773926 - 25773885
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataa 239  Q
    ||||| ||||||||||||||||||||||| ||||||||||||    
T  25773926 tactctctccgtttcataatacttgtccattttagagaataa 25773885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 10285058 - 10285100
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    ||||||||||||||||||||||||||| | |||| ||||||||    
T  10285058 tactccctccgtttcataatacttgtctattttaaagaataat 10285100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 23097724 - 23097766
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    |||||| |||||||||||||||||||||| ||| |||||||||    
T  23097724 tactccttccgtttcataatacttgtccattttggagaataat 23097766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 13365120 - 13365078
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  13365120 tactccctccgtttcataatacttgtccattttagagaataat 13365078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 19241668 - 19241710
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  19241668 tactccctccgtttcataatacttgtccattttagagaataat 19241710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 29375409 - 29375367
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  29375409 tactccctccgtttcataatacttgtccattttagagaataat 29375367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 36881557 - 36881515
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  36881557 tactccctccgtttcataatacttgtccattttagagaataat 36881515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 46694110 - 46694152
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  46694110 tactccctccgtttcataatacttgtccattttagagaataat 46694152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 240
Target Start/End: Original strand, 32834988 - 32835031
Alignment:
Q  197 ttactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    |||||||||||||||||||||||||||||| | |||||||||||    
T  32834988 ttactccctccgtttcataatacttgtccattgtagagaataat 32835031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 22388138 - 22388180
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  22388138 tactccctccgtttcataatacttgtccattttagagaataat 22388180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 23367066 - 23367024
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  23367066 tactccctccgtttcataatacttgtccattttagagaataat 23367024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 240
Target Start/End: Original strand, 12969739 - 12969782
Alignment:
Q  197 ttactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    |||||||||||||||||||||||||||||| ||| |||||||||    
T  12969739 ttactccctccgtttcataatacttgtccattttggagaataat 12969782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 1102778 - 1102736
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    ||||||||||||||||||||||||||||| || ||||||||||    
T  1102778 tactccctccgtttcataatacttgtccatttgagagaataat 1102736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 1646564 - 1646522
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    |||||||||||||||||||||| |||||| |||||||||||||    
T  1646564 tactccctccgtttcataatacctgtccattttagagaataat 1646522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 3519184 - 3519142
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    |||| |||||||||||||||||||||||| |||||||||||||    
T  3519184 tacttcctccgtttcataatacttgtccattttagagaataat 3519142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 197 - 239
Target Start/End: Original strand, 37673742 - 37673784
Alignment:
Q  197 ttactccctccgtttcataatacttgtccaatttagagaataa 239  Q
    ||||||| |||||||||||||||||||||| ||||||||||||    
T  37673742 ttactccttccgtttcataatacttgtccattttagagaataa 37673784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 39938447 - 39938405
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    |||||||||||||| |||||||||||||| |||||||||||||    
T  39938447 tactccctccgttttataatacttgtccattttagagaataat 39938405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 40756911 - 40756953
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    ||||||||||||||||||||||||||||| ||| |||||||||    
T  40756911 tactccctccgtttcataatacttgtccattttggagaataat 40756953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 284610 - 284568
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  284610 tactccctccgtttcataatacttgtccattttagagaataat 284568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 23045279 - 23045321
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  23045279 tactccctccgtttcataatacttgtccattttagagaataat 23045321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 24771906 - 24771948
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  24771906 tactccctccgtttcataatacttgtccattttagagaataat 24771948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 40783657 - 40783699
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  40783657 tactccctccgtttcataatacttgtccattttagagaataat 40783699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 321904 - 321863
Alignment:
Q  197 ttactccctccgtttcataatacttgtccaatttagagaata 238  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  321904 ttactccctccgtttcataatacttgtccattttagagaata 321863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 33083021 - 33082979
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    ||||||||||||||||||||||||||||| |||| ||||||||    
T  33083021 tactccctccgtttcataatacttgtccattttaaagaataat 33082979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 23526516 - 23526474
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    ||||||||||||||||||||||||||||| |||  ||||||||    
T  23526516 tactccctccgtttcataatacttgtccattttgaagaataat 23526474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 47037852 - 47037894
Alignment:
Q  198 tactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    ||||||||||||||||||||||||||| | |||| ||||||||    
T  47037852 tactccctccgtttcataatacttgtctattttaaagaataat 47037894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1770 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1770
Description:

Target: scaffold1770; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 240
Target Start/End: Complemental strand, 439 - 396
Alignment:
Q  197 ttactccctccgtttcataatacttgtccaatttagagaataat 240  Q
    |||||||||||||||||||||||||||||| |||||| ||||||    
T  439 ttactccctccgtttcataatacttgtccattttagaaaataat 396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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