View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9356_low_33 (Length: 241)
Name: NF9356_low_33
Description: NF9356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9356_low_33 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0017 (2 HSPs) |
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| [»] scaffold0061 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 29508436 - 29508212
Alignment:
| Q |
17 |
caatcgagaatgatgaaatgaagtgtaaagagaaggagagaaatgcactcctcaaattcaaagaaggccttcaagatgagtatggcatgttgtccacatg |
116 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29508436 |
caatggagaatgatgaaatgaagtgtgaagagaaggagagaaatgcactcctcaaattcaaagaaggccttcaagatgagtatggcatgttgtccacatg |
29508337 |
T |
|
| Q |
117 |
gaaggacgacccaaatgaagattgctgcaaatggaagggagttcgatgcaacaatcaaacaggttatgttcaaagacttgatctgcatggttcatttaca |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
29508336 |
gaaggacgacccaaatgaagattgctgcaaatggaagggagttcgatgcaacaatcaaacaggttatgttcaaagacttgatctgcatggttcgtttaca |
29508237 |
T |
|
| Q |
217 |
tgccatttgagtggtgaaattagtc |
241 |
Q |
| |
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||| ||||||||||||||||||||| |
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| T |
29508236 |
tgcaatttgagtggtgaaattagtc |
29508212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 36 - 208
Target Start/End: Original strand, 26727221 - 26727393
Alignment:
| Q |
36 |
gaagtgtaaagagaaggagagaaatgcactcctcaaattcaaagaaggccttcaagatgagtatggcatgttgtccacatggaaggacgacccaaatgaa |
135 |
Q |
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|||||| ||||||| ||||||| |||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||| || | ||||| | |
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| T |
26727221 |
gaagtgcaaagagagggagagacatgcactcctcacattcaaacaaggccttcaagatgagtatggcattttgtccacatggaaggatgatcaaaatgca |
26727320 |
T |
|
| Q |
136 |
gattgctgcaaatggaagggagttcgatgcaacaatcaaacaggttatgttcaaagacttgatctgcatggtt |
208 |
Q |
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|||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
26727321 |
gattgctgcaaatggatgggagtcttatgcaacaacgaaacaggttatgttcaaagacttgatttgcatggtt |
26727393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 37 - 200
Target Start/End: Original strand, 8341623 - 8341786
Alignment:
| Q |
37 |
aagtgtaaagagaaggagagaaatgcactcctcaaattcaaagaaggccttcaagatgagtatggcatgttgtccacatggaaggacgacccaaatgaag |
136 |
Q |
| |
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||||| ||||||| ||||||| | |||||||||| |||||| ||||| ||| |||||| ||||||||||||||| |||||||||||| |||| || || |
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| T |
8341623 |
aagtgcaaagagagggagagacacgcactcctcacgttcaaacaaggcgttcgagatgattatggcatgttgtccgcatggaaggacggtccaactgcag |
8341722 |
T |
|
| Q |
137 |
attgctgcaaatggaagggagttcgatgcaacaatcaaacaggttatgttcaaagacttgatct |
200 |
Q |
| |
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|||||||||||||||| ||| ||| ||||||||||||||| ||||||||| ||| |||||||| |
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| T |
8341723 |
attgctgcaaatggaaaggaattcaatgcaacaatcaaaccggttatgttgaaaagcttgatct |
8341786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 34 - 236
Target Start/End: Original strand, 173546 - 173748
Alignment:
| Q |
34 |
atgaagtgtaaagagaaggagagaaatgcactcctcaaattcaaagaaggccttcaagatgagtatggcatgttgtccacatggaaggacgacccaaatg |
133 |
Q |
| |
|
|||||||| ||||||| |||||| |||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||| || | ||||| |
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| T |
173546 |
atgaagtgcaaagagagagagagacgcgcactcctcacgttcaaacaaggccttcaagatgattatggcatgttgtccacatggaagggcggtcaaaatg |
173645 |
T |
|
| Q |
134 |
aagattgctgcaaatggaagggagttcgatgcaacaatcaaacaggttatgttcaaagacttgatctgcatggttcatttacatgccatttgagtggtga |
233 |
Q |
| |
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||||||||||||||||||||||||||| |||||||| |||| |||||||||||||| |||||||||||||| || ||| | |||||||||||||| |
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| T |
173646 |
aagattgctgcaaatggaagggagttcaatgcaacatcgaaactggttatgttcaaagtcttgatctgcatggctcggaaacacgtcatttgagtggtga |
173745 |
T |
|
| Q |
234 |
aat |
236 |
Q |
| |
|
||| |
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|
| T |
173746 |
aat |
173748 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 38 - 209
Target Start/End: Original strand, 168541 - 168712
Alignment:
| Q |
38 |
agtgtaaagagaaggagagaaatgcactcctcaaattcaaagaaggccttcaagatgagtatggcatgttgtccacatggaaggacgacccaaatgaaga |
137 |
Q |
| |
|
|||| ||||| | ||||||| || ||||| ||| || ||| |||||||||||||||| ||||| |||||||||||||||||||| || ||||||| ||| |
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| T |
168541 |
agtgcaaagaaagggagagacattcactcgtcactttgaaacaaggccttcaagatgactatggtatgttgtccacatggaaggaggatccaaatgcaga |
168640 |
T |
|
| Q |
138 |
ttgctgcaaatggaagggagttcgatgcaacaatcaaacaggttatgttcaaagacttgatctgcatggttc |
209 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||| ||||||||| ||| ||||||||||||||||| |
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| T |
168641 |
ttgctgcaaatggaagggagttcaatgcaacaatcaaaccggttatgttgaaaagcttgatctgcatggttc |
168712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 38 - 209
Target Start/End: Complemental strand, 30251 - 30080
Alignment:
| Q |
38 |
agtgtaaagagaaggagagaaatgcactcctcaaattcaaagaaggccttcaagatgagtatggcatgttgtccacatggaaggacgacccaaatgaaga |
137 |
Q |
| |
|
|||| ||||| | ||||||| || ||||| ||| || ||| |||||||||||||||| ||||| |||||||||||||||||||| || ||||||| ||| |
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| T |
30251 |
agtgcaaagaaagggagagacattcactcgtcactttgaaacaaggccttcaagatgactatggtatgttgtccacatggaaggaggatccaaatgcaga |
30152 |
T |
|
| Q |
138 |
ttgctgcaaatggaagggagttcgatgcaacaatcaaacaggttatgttcaaagacttgatctgcatggttc |
209 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| ||||||||| ||| ||||||||||||||||| |
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|
| T |
30151 |
ttgctgcaaatggaagggagttcaatgcaacaatcaaaccggttatgttgaaaagcttgatctgcatggttc |
30080 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 36 - 206
Target Start/End: Original strand, 44611440 - 44611610
Alignment:
| Q |
36 |
gaagtgtaaagagaaggagagaaatgcactcctcaaattcaaagaaggccttcaagatgagtatggcatgttgtccacatggaaggacgacccaaatgaa |
135 |
Q |
| |
|
|||||| ||||||| ||||||| ||||||||||| || ||| ||| |||||||||||||||||| |||||||||||||||||||| | || ||| | |
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|
| T |
44611440 |
gaagtgcaaagagagggagagacgtgcactcctcacgtttaaacaagaccttcaagatgagtatggtatgttgtccacatggaaggagggttcagatgca |
44611539 |
T |
|
| Q |
136 |
gattgctgcaaatggaagggagttcgatgcaacaatcaaacaggttatgttcaaagacttgatctgcatgg |
206 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||| |||||||||||||| |||||||||||||| |
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|
| T |
44611540 |
gattgctgcaaatggaagggagttcaatgcaacattcaaactggttatgttcaaagtcttgatctgcatgg |
44611610 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 43 - 210
Target Start/End: Original strand, 35898739 - 35898906
Alignment:
| Q |
43 |
aaagagaaggagagaaatgcactcctcaaattcaaagaaggccttcaagatgagtatggcatgttgtccacatggaaggacgacccaaatgaagattgct |
142 |
Q |
| |
|
||||||| ||||||| |||| |||||| |||||| ||||||||||||| ||||| || |||||||| |||||||| || ||||||| |||||||| |
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|
| T |
35898739 |
aaagagagggagagacatgctctcctcggtttcaaacaaggccttcaagacgagtacggtatgttgtctacatggaatgatagtccaaatgcagattgct |
35898838 |
T |
|
| Q |
143 |
gcaaatggaagggagttcgatgcaacaatcaaacaggttatgttcaaagacttgatctgcatggttca |
210 |
Q |
| |
|
|||||||||| ||||||| ||||||||| ||||| |||||| ||||||| |||||| ||||||||||| |
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|
| T |
35898839 |
gcaaatggaaaggagttcaatgcaacaaccaaactggttatattcaaagtcttgatttgcatggttca |
35898906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 22 - 209
Target Start/End: Complemental strand, 11545158 - 11544971
Alignment:
| Q |
22 |
gagaatgatgaaatgaagtgtaaagagaaggagagaaatgcactcctcaaattcaaagaaggccttcaagatgagtatggcatgttgtccacatggaagg |
121 |
Q |
| |
|
||||||| ||||||||||| | ||||| ||||||| |||||||||||| ||||||| || |||| ||||| |||||| ||||||||| |||||||| |
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|
| T |
11545158 |
gagaatggagaaatgaagtgcacagagagggagagacatgcactcctcacattcaaacaaaaccttgaagataagtatgacatgttgtcgacatggaaca |
11545059 |
T |
|
| Q |
122 |
acgacccaaatgaagattgctgcaaatggaagggagttcgatgcaacaatcaaacaggttatgttcaaagacttgatctgcatggttc |
209 |
Q |
| |
|
|| | | ||| |||||| || |||||||| |||||||| |||||||| |||||||||||||||||||| || ||| |||||||||| |
|
|
| T |
11545058 |
acaatcaaaacccagattgttgtaaatggaaaggagttcgttgcaacaaccaaacaggttatgttcaaagtctcgatttgcatggttc |
11544971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 52 - 176
Target Start/End: Complemental strand, 44786129 - 44786005
Alignment:
| Q |
52 |
gagagaaatgcactcctcaaattcaaagaaggccttcaagatgagtatggcatgttgtccacatggaaggacgacccaaatgaagattgctgcaaatgga |
151 |
Q |
| |
|
|||||| | |||||||||| ||||||| ||||| |||||||||| ||||||||||||||||||| ||| |||| ||||||| |||||| ||||||||| |
|
|
| T |
44786129 |
gagagacaagcactcctcacattcaaacaaggcattcaagatgattatggcatgttgtccacatcgaaagacggtccaaatgcagattgttgcaaatggg |
44786030 |
T |
|
| Q |
152 |
agggagttcgatgcaacaatcaaac |
176 |
Q |
| |
|
| ||||||| ||||||||| ||||| |
|
|
| T |
44786029 |
aaggagttcaatgcaacaaccaaac |
44786005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 145
Target Start/End: Original strand, 44144599 - 44144707
Alignment:
| Q |
37 |
aagtgtaaagagaaggagagaaatgcactcctcaaattcaaagaaggccttcaagatgagtatggcatgttgtccacatggaaggacgacccaaatgaag |
136 |
Q |
| |
|
||||| ||||||| ||||||| | |||||||||| |||||| |||| |||||||||| |||||| || | || ||||||||||| || || ||||||| |
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|
| T |
44144599 |
aagtgcaaagagagggagagacacgcactcctcactttcaaacaaggtgttcaagatgactatggcgtgctttcaacatggaaggatgatcctaatgaag |
44144698 |
T |
|
| Q |
137 |
attgctgca |
145 |
Q |
| |
|
||||||||| |
|
|
| T |
44144699 |
attgctgca |
44144707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 37 - 209
Target Start/End: Complemental strand, 29228977 - 29228813
Alignment:
| Q |
37 |
aagtgtaaagagaaggagagaaatgcactcctcaaattcaaagaaggccttcaagatgagtatggcatgttgtccacatggaaggacgacccaaatgaag |
136 |
Q |
| |
|
||||| ||||||| ||||||| | ||||| |||| |||||| |||||||| |||||||| ||| |||||||| ||||||||| |||| |||| || || |
|
|
| T |
29228977 |
aagtgcaaagagagggagagacaagcactgctcaggttcaaacaaggccttaaagatgagaatgtcatgttgttcacatggaaagacggtccaactgcag |
29228878 |
T |
|
| Q |
137 |
attgctgcaaatggaagggagttcgatgcaacaatcaaacaggttatgttcaaagacttgatctgcatggttc |
209 |
Q |
| |
|
|||| ||||||||| | ||||||||| ||||| |||||||||||||| |||||||||||| |||| |
|
|
| T |
29228877 |
attgttgcaaatgggaa--------atgcaacaaccaaactggttatgttcaaagtcttgatctgcatcgttc |
29228813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 37 - 209
Target Start/End: Complemental strand, 29342276 - 29342112
Alignment:
| Q |
37 |
aagtgtaaagagaaggagagaaatgcactcctcaaattcaaagaaggccttcaagatgagtatggcatgttgtccacatggaaggacgacccaaatgaag |
136 |
Q |
| |
|
||||| ||||||| ||||||| | ||||| |||| |||||| |||||||| |||||||| ||| |||||||| ||||||||| |||| |||| || || |
|
|
| T |
29342276 |
aagtgcaaagagagggagagacaagcactgctcaggttcaaacaaggccttaaagatgagaatgtcatgttgttcacatggaaagacggtccaactgcag |
29342177 |
T |
|
| Q |
137 |
attgctgcaaatggaagggagttcgatgcaacaatcaaacaggttatgttcaaagacttgatctgcatggttc |
209 |
Q |
| |
|
|||| ||||||||| | ||||||||| ||||| |||||||||||||| |||||||||||| |||| |
|
|
| T |
29342176 |
attgttgcaaatgggaa--------atgcaacaaccaaactggttatgttcaaagtcttgatctgcatcgttc |
29342112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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