View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9356_low_34 (Length: 239)

Name: NF9356_low_34
Description: NF9356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9356_low_34
NF9356_low_34
[»] chr8 (3 HSPs)
chr8 (1-224)||(38341856-38342060)
chr8 (91-120)||(16515088-16515117)
chr8 (147-215)||(45000131-45000198)
[»] chr2 (7 HSPs)
chr2 (147-221)||(37422886-37422960)
chr2 (73-154)||(21449705-21449781)
chr2 (43-120)||(41873714-41873792)
chr2 (156-204)||(13728636-13728685)
chr2 (71-108)||(37423155-37423192)
chr2 (147-221)||(34957894-34957970)
chr2 (153-185)||(41873622-41873654)
[»] chr3 (5 HSPs)
chr3 (147-224)||(37549926-37550003)
chr3 (12-63)||(31148873-31148924)
chr3 (181-226)||(20642068-20642114)
chr3 (3-56)||(44442264-44442321)
chr3 (147-191)||(48507450-48507494)
[»] chr4 (6 HSPs)
chr4 (147-222)||(16502583-16502659)
chr4 (157-204)||(38870592-38870639)
chr4 (147-221)||(40020673-40020752)
chr4 (88-120)||(38870697-38870729)
chr4 (3-61)||(16502241-16502299)
chr4 (88-118)||(49445045-49445075)
[»] chr1 (6 HSPs)
chr1 (142-218)||(11046900-11046978)
chr1 (148-224)||(19607227-19607304)
chr1 (149-221)||(13818823-13818895)
chr1 (68-120)||(40077026-40077078)
chr1 (85-120)||(50845719-50845754)
chr1 (3-56)||(46395985-46396042)
[»] scaffold0493 (1 HSPs)
scaffold0493 (137-204)||(4167-4234)
[»] chr6 (3 HSPs)
chr6 (3-62)||(779494-779553)
chr6 (43-117)||(10525381-10525454)
chr6 (147-215)||(10525257-10525324)
[»] chr7 (2 HSPs)
chr7 (147-193)||(45249228-45249274)
chr7 (68-115)||(8530377-8530423)
[»] chr5 (9 HSPs)
chr5 (146-191)||(29075674-29075719)
chr5 (154-221)||(15047156-15047224)
chr5 (25-64)||(19176059-19176098)
chr5 (1-40)||(37910342-37910381)
chr5 (181-226)||(21524218-21524264)
chr5 (181-226)||(21534778-21534824)
chr5 (147-217)||(31673991-31674063)
chr5 (1-57)||(22771163-22771219)
chr5 (68-120)||(37910257-37910309)


Alignment Details
Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 38342060 - 38341856
Alignment:
Q  1 tgtgttgggatatagaataatggctaattagagtagttaatctagttaagagttgttatagtcagtcagttagttattcggattggttagagagtatgtg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38342060 tgtgttgggatatagaataatggctaattagagtagttaatctagttaagagttgttatagtcagtcagttagttattcggattggttagagagtatgtg 38341961  T
Q  101 tataaataagagaacacaaaaggttagataaagagtatcttttgaatattgtaaaggggaaacccttggaggagagattatctcccattctttcctattt 200  Q
    |||||||| |||||||| |||||||||                  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38341960 tataaataggagaacac-aaaggttag------------------atattgtaaaggggaaacccttggaggagagattatctcccattctttcctattt 38341880  T
Q  201 cttagtaaaagtgttctttctatt 224  Q
    ||||||||||||||||||||||||    
T  38341879 cttagtaaaagtgttctttctatt 38341856  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 120
Target Start/End: Original strand, 16515088 - 16515117
Alignment:
Q  91 agagtatgtgtataaataagagaacacaaa 120  Q
    ||||||||||||||||||||||||||||||    
T  16515088 agagtatgtgtataaataagagaacacaaa 16515117  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 45000198 - 45000131
Alignment:
Q  147 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgtt 215  Q
    |||||| ||||||||||||||| |||||| ||| |||||  |||| |||||||||||| ||||| ||||    
T  45000198 tattgtgaaggggaaacccttg-aggagatattctctcctgttctatcctatttcttaataaaattgtt 45000131  T

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Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 147 - 221
Target Start/End: Complemental strand, 37422960 - 37422886
Alignment:
Q  147 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttct 221  Q
    |||||| |||| ||||||||||||||||||||| ||||| ||||| |||||||||||  ||||||||||||||||    
T  37422960 tattgtgaaggtgaaacccttggaggagagattctctcctattctatcctatttcttcataaaagtgttctttct 37422886  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 154
Target Start/End: Complemental strand, 21449781 - 21449705
Alignment:
Q  73 gttattcggattggttagagagtatgtgtataaataagagaacacaaaaggttagataaagagtatcttttgaatattgtaa 154  Q
    |||||| |||||  |||||||||||||||||||||| ||||||| |||| ||    ||||||||||||||||||||||||||    
T  21449781 gttatttggattacttagagagtatgtgtataaataggagaaca-aaaatgt----taaagagtatcttttgaatattgtaa 21449705  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 120
Target Start/End: Complemental strand, 41873792 - 41873714
Alignment:
Q  43 tagttaagagttgttatagtcagtcagttagttattcggattggttagagagtatgtgtataaa-taagagaacacaaa 120  Q
    ||||||||||||| |||||| ||| |   ||||||| ||||| ||||||||||||||||||||| || |||||||||||    
T  41873792 tagttaagagttgctatagttagttacaaagttatttggattagttagagagtatgtgtataaattaggagaacacaaa 41873714  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 13728636 - 13728685
Alignment:
Q  156 ggggaaacccttggaggagaga-ttatctcccattctttcctatttctta 204  Q
    |||||||||||||||||||| | || ||||| ||||||||||||||||||    
T  13728636 ggggaaacccttggaggagatatttctctcctattctttcctatttctta 13728685  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 108
Target Start/End: Complemental strand, 37423192 - 37423155
Alignment:
Q  71 tagttattcggattggttagagagtatgtgtataaata 108  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  37423192 tagttatttggattagttagagagtatgtgtataaata 37423155  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 221
Target Start/End: Complemental strand, 34957970 - 34957894
Alignment:
Q  147 tattgtaaaggggaaacccttggaggagaga-ttatctcccattctttcctatttc-ttagtaaaagtgttctttct 221  Q
    |||||| |||| | ||||||||||||||||| || ||||| ||| ||||||||||| ||| ||||||||||| ||||    
T  34957970 tattgtgaaggtgtaacccttggaggagagatttctctcctattatttcctatttctttattaaaagtgttcgttct 34957894  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 185
Target Start/End: Complemental strand, 41873654 - 41873622
Alignment:
Q  153 aaaggggaaacccttggaggagagattatctcc 185  Q
    ||||||||||| |||||||||||||||||||||    
T  41873654 aaaggggaaactcttggaggagagattatctcc 41873622  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 147 - 224
Target Start/End: Original strand, 37549926 - 37550003
Alignment:
Q  147 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttctatt 224  Q
    |||||| |||||||||| ||||||||||||||||||||| ||||| || |||||||||   |||||||||||||||||    
T  37549926 tattgtgaaggggaaactcttggaggagagattatctcctattctatcatatttcttaaataaagtgttctttctatt 37550003  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 31148924 - 31148873
Alignment:
Q  12 atagaataatggctaattagagtagttaatctagttaagagttgttatagtc 63  Q
    |||||||| ||| ||||||||||||||||  |||||||||||||||| ||||    
T  31148924 atagaatagtggttaattagagtagttaaagtagttaagagttgttacagtc 31148873  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 226
Target Start/End: Complemental strand, 20642114 - 20642068
Alignment:
Q  181 tctcccattctttcctattt-cttagtaaaagtgttctttctattga 226  Q
    |||||||||||||||||||| |||| ||||||| |||||||||||||    
T  20642114 tctcccattctttcctattttcttaataaaagttttctttctattga 20642068  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 44442321 - 44442264
Alignment:
Q  3 tgttgggatatagaataatggctaatta----gagtagttaatctagttaagagttgt 56  Q
    |||| |||||||||||||||||||||||    || |||||||| ||||||||||||||    
T  44442321 tgttaggatatagaataatggctaattaattagaatagttaatgtagttaagagttgt 44442264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 191
Target Start/End: Original strand, 48507450 - 48507494
Alignment:
Q  147 tattgtaaaggggaaacccttggaggagagattatctcccattct 191  Q
    |||||| || ||||||||||||||||||||||| ||||| |||||    
T  48507450 tattgtgaaagggaaacccttggaggagagattctctcctattct 48507494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 16502583 - 16502659
Alignment:
Q  147 tattgtaaaggggaaacccttggaggagaga-ttatctcccattctttcctatttcttagtaaaagtgttctttcta 222  Q
    |||||| |||||||||||||||||||||||| || ||||| ||||| || ||||||||| || ||||||||||||||    
T  16502583 tattgtgaaggggaaacccttggaggagagatttctctcctattctatcatatttcttaatataagtgttctttcta 16502659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 204
Target Start/End: Complemental strand, 38870639 - 38870592
Alignment:
Q  157 gggaaacccttggaggagagattatctcccattctttcctatttctta 204  Q
    |||||||||||| |||||||||||||||||| ||| ||||||||||||    
T  38870639 gggaaacccttgcaggagagattatctcccactctatcctatttctta 38870592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 221
Target Start/End: Complemental strand, 40020752 - 40020673
Alignment:
Q  147 tattgtaaaggggaaacccttggaggagagatt-atctccc-attctttcctattt---cttagtaaaagtgttctttct 221  Q
    |||||| |||||||| |||||| |||||||||| ||||||| ||||||||||||||   |||| ||||||||||||||||    
T  40020752 tattgtgaaggggaatcccttgaaggagagatttatctccctattctttcctattttttcttaataaaagtgttctttct 40020673  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 120
Target Start/End: Complemental strand, 38870729 - 38870697
Alignment:
Q  88 tagagagtatgtgtataaataagagaacacaaa 120  Q
    |||||||||||||||||||||||||||||||||    
T  38870729 tagagagtatgtgtataaataagagaacacaaa 38870697  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 16502241 - 16502299
Alignment:
Q  3 tgttgggatatagaataatggctaattagagtagttaatctagttaagagttgttatag 61  Q
    |||| |||||||  |||||||| |||||| ||||||||  |||||||||||||||||||    
T  16502241 tgttaggatatattataatggccaattagtgtagttaaagtagttaagagttgttatag 16502299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 118
Target Start/End: Complemental strand, 49445075 - 49445045
Alignment:
Q  88 tagagagtatgtgtataaataagagaacaca 118  Q
    |||||||||||||||||||||||||||||||    
T  49445075 tagagagtatgtgtataaataagagaacaca 49445045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 218
Target Start/End: Original strand, 11046900 - 11046978
Alignment:
Q  142 ttgaatattgtaaaggggaaacccttggaggagaga-ttatctcccattctttccta-tttcttagtaaaagtgttctt 218  Q
    ||||| ||||| |||||||||||||||||| ||||| |||||||| ||||||||||| ||||||| |||||| ||||||    
T  11046900 ttgaacattgtgaaggggaaacccttggagtagagatttatctcctattctttcctattttcttaataaaagagttctt 11046978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 224
Target Start/End: Complemental strand, 19607304 - 19607227
Alignment:
Q  148 attgtaaaggggaaacccttggaggagagattatctcccattctttccta-tttcttagtaaaagtgttctttctatt 224  Q
    ||||| |||||||||||||||||||||||||| ||||| | |||||| || ||||||| | ||| |||||||| ||||    
T  19607304 attgtgaaggggaaacccttggaggagagattctctcctactctttcttattttcttaattaaattgttctttatatt 19607227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 13818895 - 13818823
Alignment:
Q  149 ttgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgttctttct 221  Q
    |||| ||||||||||||||| |||||||||| ||||||||| | || ||||||||  | ||||| ||||||||    
T  13818895 ttgtgaaggggaaacccttgaaggagagattctctcccattttatcatatttcttcatgaaagttttctttct 13818823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 40077026 - 40077078
Alignment:
Q  68 agttagttattcggattggttagagagtatgtgtataaataagagaacacaaa 120  Q
    |||| |||||| ||||| ||||||||||||||| ||||||| |||||||||||    
T  40077026 agtttgttatttggattagttagagagtatgtgcataaataggagaacacaaa 40077078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 120
Target Start/End: Complemental strand, 50845754 - 50845719
Alignment:
Q  85 ggttagagagtatgtgtataaataagagaacacaaa 120  Q
    ||||||||||||||||||||||||||| ||||||||    
T  50845754 ggttagagagtatgtgtataaataagaaaacacaaa 50845719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 46395985 - 46396042
Alignment:
Q  3 tgttgggatatagaataatggc----taattagagtagttaatctagttaagagttgt 56  Q
    |||| |||||||||||||||||    |||||||| |||||||| ||||||||||||||    
T  46395985 tgttaggatatagaataatggctaattaattagaatagttaatgtagttaagagttgt 46396042  T

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Target: scaffold0493 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0493
Description:

Target: scaffold0493; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 204
Target Start/End: Complemental strand, 4234 - 4167
Alignment:
Q  137 atcttttgaatattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttctta 204  Q
    |||||||||||||||| || |||||||||||| |||||||||| || || ||||| || |||||||||    
T  4234 atcttttgaatattgtgaatgggaaacccttgaaggagagattctcccctattctatcatatttctta 4167  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 779494 - 779553
Alignment:
Q  3 tgttgggatatagaataatggctaattagagtagttaatctagttaagagttgttatagt 62  Q
    |||| |||||| ||||||||||||| ||||||||||||| |||||||||| || ||||||    
T  779494 tgttaggatatggaataatggctaaatagagtagttaatgtagttaagagctgctatagt 779553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 117
Target Start/End: Complemental strand, 10525454 - 10525381
Alignment:
Q  43 tagttaagagttgttatagtcagtcagttagttattcggattggttagagagtatgtgtataaataagagaacac 117  Q
    |||||| ||||||||| ||  ||| |||| ||| || ||||| |||||||||| |||||||||||||||||||||    
T  10525454 tagttatgagttgttagaga-agttagtttgttttttggattagttagagagtgtgtgtataaataagagaacac 10525381  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 10525324 - 10525257
Alignment:
Q  147 tattgtaaaggggaaacccttggaggagagattatctcccattctttcctatttcttagtaaaagtgtt 215  Q
    |||||| ||||||||||||||| |||||||||| ||||  ||||| ||| |||||||| ||||| ||||    
T  10525324 tattgtgaaggggaaacccttg-aggagagattttctcgtattctatccaatttcttaataaaattgtt 10525257  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 193
Target Start/End: Complemental strand, 45249274 - 45249228
Alignment:
Q  147 tattgtaaaggggaaacccttggaggagagattatctcccattcttt 193  Q
    |||||| |||||||||||||||||||| ||||| |||||||||||||    
T  45249274 tattgtgaaggggaaacccttggaggatagattttctcccattcttt 45249228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 8530423 - 8530377
Alignment:
Q  68 agttagttattcggattggttagagagtatgtgtataaataagagaac 115  Q
    ||||||||||| ||||| ||||||||| ||||||||||||||||||||    
T  8530423 agttagttatttggattagttagagag-atgtgtataaataagagaac 8530377  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 191
Target Start/End: Original strand, 29075674 - 29075719
Alignment:
Q  146 atattgtaaaggggaaacccttggaggagagattatctcccattct 191  Q
    ||||||| ||||||||| |||||||||||||||||||||| |||||    
T  29075674 atattgtgaaggggaaaaccttggaggagagattatctccaattct 29075719  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 221
Target Start/End: Original strand, 15047156 - 15047224
Alignment:
Q  154 aaggggaaacccttggaggagaga-ttatctcccattctttcctatttcttagtaaaagtgttctttct 221  Q
    |||||||||||||||||||||||| || ||||| ||||||| ||| || | | ||||||||||||||||    
T  15047156 aaggggaaacccttggaggagagatttctctcctattcttttctacttatcaataaaagtgttctttct 15047224  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 64
Target Start/End: Original strand, 19176059 - 19176098
Alignment:
Q  25 taattagagtagttaatctagttaagagttgttatagtca 64  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  19176059 taattagagtagttaaagtagttaagagttgttatagtca 19176098  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 37910381 - 37910342
Alignment:
Q  1 tgtgttgggatatagaataatggctaattagagtagttaa 40  Q
    ||||||||||| |||||||||| |||||||||||||||||    
T  37910381 tgtgttgggatgtagaataatgactaattagagtagttaa 37910342  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 21524218 - 21524264
Alignment:
Q  181 tctcccattctttcctattt-cttagtaaaagtgttctttctattga 226  Q
    |||||||||||||||||||| |||| |||| ||||||||||||||||    
T  21524218 tctcccattctttcctattttcttaataaatgtgttctttctattga 21524264  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 21534778 - 21534824
Alignment:
Q  181 tctcccattctttcctattt-cttagtaaaagtgttctttctattga 226  Q
    |||||||||||||||||||| |||| |||| ||||||||||||||||    
T  21534778 tctcccattctttcctattttcttaataaatgtgttctttctattga 21534824  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 217
Target Start/End: Original strand, 31673991 - 31674063
Alignment:
Q  147 tattgtaaaggggaaacccttggaggagagattatctcccat--tctttcctatttcttagtaaaagtgttct 217  Q
    |||||| |||||||| ||||||||||||||||| ||||| ||  | | |||||||| ||| ||||||||||||    
T  31673991 tattgtgaaggggaaccccttggaggagagattctctcctattatatatcctattttttaataaaagtgttct 31674063  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 22771163 - 22771219
Alignment:
Q  1 tgtgttgggatatagaataatggctaattagagtagttaatctagttaagagttgtt 57  Q
    |||||| ||||||| |||||||||||| ||||||||||||  ||| || ||||||||    
T  22771163 tgtgttaggatataaaataatggctaactagagtagttaaattagctatgagttgtt 22771219  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 37910309 - 37910257
Alignment:
Q  68 agttagttattcggattggttagagagtatgtgtataaataagagaacacaaa 120  Q
    ||||||||||| ||||| |||| |||||||||| ||||||| ||||| |||||    
T  37910309 agttagttatttggattagttaaagagtatgtgcataaataggagaatacaaa 37910257  T

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