View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9356_low_37 (Length: 222)
Name: NF9356_low_37
Description: NF9356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9356_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 129; Significance: 6e-67; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 13 - 205
Target Start/End: Original strand, 36158255 - 36158432
Alignment:
| Q |
13 |
ttattctcacagttagattttatttattatccatatctatgatcaaaaggtcaaaagtttgatcctcactgcctctatatattctcctatctggaaattg |
112 |
Q |
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| T |
36158255 |
ttattctcactgttagattttatttattatccatatctatg--------gtcaaaagtttgatcctcactgcctctat----tctcctatctggaaattg |
36158342 |
T |
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| Q |
113 |
aatttcagaaaatggtaaaattaggtttatgcattttccatctttgttacctccatttttctatataaaattgaatttatcccaagactcttt |
205 |
Q |
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| T |
36158343 |
aatttcagaaaatggtaaaat---gtttatgcattttccatctttgttacctccatttttctatataaaattgaatttatcccaagactcttt |
36158432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 48 - 153
Target Start/End: Original strand, 36153346 - 36153446
Alignment:
| Q |
48 |
tctatgatcaaaaggtcaaaagtttgatcctcactgcctctatatattctcctatctggaaattgaatttcagaaaatggtaaaattaggtttatgcatt |
147 |
Q |
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||||||||||| ||||| ||||||||||||| ||||||||||| ||||||| ||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
36153346 |
tctatgatcaagaggtctaaagtttgatccttactgcctctat----tctcctaactg-aaattgaatttcagaaaatgataaaattaggtttatgcatt |
36153440 |
T |
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| Q |
148 |
ttccat |
153 |
Q |
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||||| |
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| T |
36153441 |
gtccat |
36153446 |
T |
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