View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9356_low_5 (Length: 393)
Name: NF9356_low_5
Description: NF9356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9356_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 14 - 387
Target Start/End: Original strand, 11149373 - 11149744
Alignment:
| Q |
14 |
cattcttggatacaagtaacatagcagttacttgagatgttagctatatatttatttatttatcacttgagatgtcagttcaatggtaaaacatacattt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
11149373 |
cattcttggatacaagtaacatagcagttacttgagatgttagctatatatttatttatttatcacttgagatgtcagttcaatggtaaaacttacattt |
11149472 |
T |
|
| Q |
114 |
taatttcaaacgacgaatttcaaattctctctaaggtggttgtaacatggcaattagttttcactattttatagtagtgttttttaggtagtacttcaag |
213 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11149473 |
taatttcaaacgacgaagttcaaattctctctaaggtggttgtaacatggcaattagttttcactattttatagtagtgttttttaggtagtacttcaag |
11149572 |
T |
|
| Q |
214 |
taatggttggtagctttgttcctctcattttatcttattattcttatgaactattttgtccaatttaaattaagaagtttaatttcaaatataccatcta |
313 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
11149573 |
taatagttggtagctttgttcctctcattttatcttattattcttatgaactattttgtccaatttaaatttagaagtttaatttcaaatatatcatcta |
11149672 |
T |
|
| Q |
314 |
aaaattaagaatttgaatttcttctttattttattaaaatacattatcctttccttatatggataaaacaccaa |
387 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
11149673 |
aaaattaagaatttgaatttcttcttta--ttattaaaatacattatcctttctttatatggataaaacaccaa |
11149744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University