View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9356_low_7 (Length: 388)
Name: NF9356_low_7
Description: NF9356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9356_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 18 - 374
Target Start/End: Original strand, 37360036 - 37360392
Alignment:
| Q |
18 |
cgatcaatggggaaggatggcccctgatccagtaaggtggccttcatccaaaagtgggaatggattcactgaaatagctaagaaagtacatagcttaggt |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
37360036 |
cgatcaatggggaaggatggcccctgatccagtaaggtggccttcatccaaaagtgggaatggattcaccgaaatagctaagaaagtacatagcttaggt |
37360135 |
T |
|
| Q |
118 |
ttgaagtttggaattcatattatggcagggattagcacacaagctgtgaatgcaaacacccctatcctagatacaacaacggtattattttgattttctg |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37360136 |
ttgaagtttggaattcatattatggcagggattagcacacaagctgtgaatgcaaacacccctatcctagatacaacaacggtattattttgattttctg |
37360235 |
T |
|
| Q |
218 |
ctataactttatcttctatatatatttatgcattatacattcacaagtatatcagtagataaactcgaataagcaatttcaaaataaggcaattcaaaga |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37360236 |
ctataactttatcttctatatatatttatgcattatacattcacaagtatatcagtagataaactcgaataagcaatttcaaaataaggcaattcaaaga |
37360335 |
T |
|
| Q |
318 |
gacacataatctaattttctttttatccttattgaccttttcttgcgatatcacagg |
374 |
Q |
| |
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||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
37360336 |
gacacataatctatttttttttttatccttattgaccttttcttgcgatatcacagg |
37360392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 18 - 374
Target Start/End: Complemental strand, 37368028 - 37367670
Alignment:
| Q |
18 |
cgatcaatggggaaggatggcccctgatccagtaaggtggccttcatccaaaagtgggaatggattcactgaaatagctaagaaagtacatagcttaggt |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
37368028 |
cgatcaatggggaaggatggcccctgatccagtaaggtggccttcatccaaaagtgggaatggattcacagaaatagctaagaaagtacatagcttaggt |
37367929 |
T |
|
| Q |
118 |
ttgaagtttggaattcatattatggcagggattagcacacaagctgtgaatgcaaacacccctatcctagatacaacaacggtattattttgattttctg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37367928 |
ttgaagtttggaattcatattatggcagggattagcacacaagctgtgaatgcaaacacccctatcctagatacaacaacggtattattttgattttctg |
37367829 |
T |
|
| Q |
218 |
ctataactttatcttctatatatatttatgcattatacattcacaagtatatcagtagataaactcgaataagcaatttcaaaataaggcaattcaaaga |
317 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37367828 |
ctataactttatcttctatatatatttatgcattatacatacacaagtatatcagtagataaactcgaataagcaatttcaaaataaggcaattcaaaga |
37367729 |
T |
|
| Q |
318 |
gacacataatctaa--ttttctttttatccttattgaccttttcttgcgatatcacagg |
374 |
Q |
| |
|
|||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
37367728 |
gacacatattctaattttttttttttatccttattgaccttttcttgcgatatcacagg |
37367670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 19 - 321
Target Start/End: Original strand, 37374859 - 37375163
Alignment:
| Q |
19 |
gatcaatggggaaggatggcccctgatccagtaaggtggccttcatccaaaagtgggaatggattcactgaaatagctaagaaagtacatagcttaggtt |
118 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||||||||| ||||| |||| |||||||||| |||| ||||||||||||| ||||||||||||| |
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| T |
37374859 |
gatcaatggggaaggatggtccctgatccagtcaggtggccttcttccaatggtggaaatggattcagtgaagtagctaagaaagtgcatagcttaggtt |
37374958 |
T |
|
| Q |
119 |
tgaagtttggaattcatattatggcagggattagcacacaagctgtgaatgcaaacacccctatcctagatacaacaacggtattattttgattttctgc |
218 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37374959 |
taaagtttggaattcatattatggcagggattagcacacaagctgtgaatgcaaacacccctatcctagatacagcaacggtattattttgattttctgc |
37375058 |
T |
|
| Q |
219 |
tataactttatcttctatata--tatttatgcattatacattcacaagtatatcagtagataaactcgaataagcaatttcaaaataaggcaattcaaag |
316 |
Q |
| |
|
|||||||||||| |||||||| |||||||| |||||| |||||||||||| ||||||||| ||||| ||||||||| || |||||||| |||||| || |
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|
| T |
37375059 |
tataactttatcatctatatatttatttatgtattataaattcacaagtatgtcagtagattaactcaaataagcaactttaaaataagcaaattcagag |
37375158 |
T |
|
| Q |
317 |
agaca |
321 |
Q |
| |
|
||||| |
|
|
| T |
37375159 |
agaca |
37375163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 23 - 331
Target Start/End: Original strand, 37382205 - 37382508
Alignment:
| Q |
23 |
aatggggaaggatggcccctgatccagtaaggtggccttcatccaaaagtgggaatggattcactgaaatagctaagaaagtacatagcttaggtttgaa |
122 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||| |||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
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|
| T |
37382205 |
aatggggaaggatggttcctgatccaggaaggtggccttcttccaaaggtgggaatggattcagtgaagtagctaagaaagtacatagcttaggtttgaa |
37382304 |
T |
|
| Q |
123 |
gtttggaattcatattatggcagggattagcacacaagctgtgaatgcaaacacccctatcctagatacaacaacggtattattttgattttctgctata |
222 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
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|
| T |
37382305 |
atttggaattcatgttatgagagggattagcacacaagctgtgaatgcaaacacccctatcctagat---acaacggtattattttgattctctgctata |
37382401 |
T |
|
| Q |
223 |
actttatcttctatatatatttatgcattatacattcacaagtatatcagtagataaactcgaataagcaatttcaaaataaggcaattcaaagagacac |
322 |
Q |
| |
|
||||||||||| || || || || |||||| ||||||| |||| | ||| ||||||||| ||||||| | ||||||||||| |||||||||||||||| |
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|
| T |
37382402 |
actttatcttc--aatttaattctgtattataaattcacatgtatgtaagtggataaactcaaataagcgaattcaaaataagccaattcaaagagacac |
37382499 |
T |
|
| Q |
323 |
ataatctaa |
331 |
Q |
| |
|
||| |||| |
|
|
| T |
37382500 |
gtaacctaa |
37382508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 23 - 203
Target Start/End: Complemental strand, 41230403 - 41230223
Alignment:
| Q |
23 |
aatggggaaggatggcccctgatccagtaaggtggccttcatccaaaagtgggaatggattcactgaaatagctaagaaagtacatagcttaggtttgaa |
122 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||||| ||| | |||||||||| || | |||| |||||||||||||||||||||||||||| || |
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|
| T |
41230403 |
aatggggaaggatggtccctgatccaggaaggtggccttcttcccatggtgggaatgggttaagtgaagtagctaagaaagtacatagcttaggtttaaa |
41230304 |
T |
|
| Q |
123 |
gtttggaattcatattatggcagggattagcacacaagctgtgaatgcaaacacccctatcctagatacaacaacggtatt |
203 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||||| ||||||| |||||||| ||||||||| ||| |||||| |
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|
| T |
41230303 |
gtttggaattcatattatgagagggataagcacacaagctgtggatgcaaatacccctattctagatacatcaaaggtatt |
41230223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 115 - 201
Target Start/End: Original strand, 39243459 - 39243545
Alignment:
| Q |
115 |
ggtttgaagtttggaattcatattatggcagggattagcacacaagctgtgaatgcaaacacccctatcctagatacaacaacggta |
201 |
Q |
| |
|
||||| |||||||| |||||| ||||| |||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| |
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|
| T |
39243459 |
ggtttaaagtttgggattcatgttatgagagggataagcacacaagctgtcaatgcaaacacgcctatcctagatacaacaacggta |
39243545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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