View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9356_low_8 (Length: 370)
Name: NF9356_low_8
Description: NF9356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9356_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 75 - 354
Target Start/End: Original strand, 39519536 - 39519815
Alignment:
| Q |
75 |
tgaccaaaaacaaagtatgacaaataatgagtaaataaaaacaaacaagcaaaggtcaattaattgagaaaagtaagtaattaaaccatttaaaacatgt |
174 |
Q |
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| T |
39519536 |
tgaccaaaaacaaagtatgacaaataatgagtaaataaaaacaaacaagcaaaggtcaattaattgagaaaagtaagtaattaaaccatttaaaacatgt |
39519635 |
T |
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| Q |
175 |
tgcaatgattcaggatgagtaggagcagaatctggaagaagctttccaagataacctggctgcaatggggtaaaaatgttgaaagaaattgaaacagtaa |
274 |
Q |
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| T |
39519636 |
tgcaatgattcaggatgagtaggagcagaatctggaagaagctttccaagataacctggctgcaatggggtaaaaatgttgaaagaaattgaaacaataa |
39519735 |
T |
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| Q |
275 |
caaatattagatgaaaatggatagaaagagaacctgaacttggctaagaactggaaaattttcaatggttttgtagtaat |
354 |
Q |
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| T |
39519736 |
caaatattagatgaaaatggatagaaagagaacctgaacttggctaagaactggaaaattttcaatggttttgtagtaat |
39519815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 135 - 354
Target Start/End: Original strand, 39532054 - 39532273
Alignment:
| Q |
135 |
taattgagaaaagtaagtaattaaaccatttaaaacatgttgcaatgattcaggatgagtaggagcagaatctggaagaagctttccaagataacctggc |
234 |
Q |
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| T |
39532054 |
taattgagaaaagtaagtaattaaaccatttaaaacatgttgcaatgattcaggatgagtaggagcagaatctggtagaagctttccaagataacctggc |
39532153 |
T |
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| Q |
235 |
tgcaatggggtaaaaatgttgaaagaaattgaaacagtaacaaatattagatgaaaatggatagaaagagaacctgaacttggctaagaactggaaaatt |
334 |
Q |
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| T |
39532154 |
tgcaatggggtaaaaatattgaaagaaattgaaacagtaacaaatattagatgaaaatggatagaaagagaacctgaacttggctaagaacagggaaatt |
39532253 |
T |
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| Q |
335 |
ttcaatggttttgtagtaat |
354 |
Q |
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| T |
39532254 |
ttcaattgttttgtagtaat |
39532273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 39531902 - 39531980
Alignment:
| Q |
1 |
tcatacgccaatgcaaaaacacatcaagattttgatgtctatgtgactgtgaatgaagcctcatcagccacatttgacc |
79 |
Q |
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| T |
39531902 |
tcatacgccaatgcaaaagcacatcaagattttgatgtctatgtgactgtgattgaagcctcatcagccacatttgacc |
39531980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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