View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9357_high_13 (Length: 343)
Name: NF9357_high_13
Description: NF9357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9357_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 337
Target Start/End: Original strand, 35870510 - 35870829
Alignment:
| Q |
18 |
gtttgcatccaaattatccaaaccacttacacataatgattctgttgaagacagtgtttctaaggcatctgaaaaagcatcatcatcattgtcgtcatcg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35870510 |
gtttgcatccaaattatccaaaccacttacacataatgattctgttgaagacagtgtttctaaggcatctgaaaaagcatcatcatcattgtcgtcatcg |
35870609 |
T |
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| Q |
118 |
tcatcctcttccaaattttgtagcttttcannnnnnngtcctttgtcatgatctactttattcataatgtcacttaaagaattcgatttacttgaggacc |
217 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||| |||||||||||| |||||||| |||||| |
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| T |
35870610 |
tcatcctcttccaaattttgtagcttttcatccttttgtcctttgttatgatctactttattcatgatgttacttaaagaatttgatttactcaaggacc |
35870709 |
T |
|
| Q |
218 |
taacctttttatcaagtttagatctactagggatatgctcccaattgaaagacgcaaaaacaggttctgttacttgatcttgagtcatgtctgatttgtt |
317 |
Q |
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||| ||| ||||||| ||||| | || ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
35870710 |
taaacttgttatcaaatttaggcccaccagggatatgctcccaattgaaagacacaaacacaggttctgttacttgatcttgagtcatgtctgatttgtt |
35870809 |
T |
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| Q |
318 |
gaatggaagagaattatcta |
337 |
Q |
| |
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| |||||||||||||||||| |
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| T |
35870810 |
gtatggaagagaattatcta |
35870829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 35878057 - 35878265
Alignment:
| Q |
18 |
gtttgcatccaaattatccaaaccacttacacataatgattctgttgaagacagtgtttctaaggcatctgaaaaagcatcatcatcattgtcgtcatcg |
117 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
35878057 |
gtttgcatccaaattatccaagccacttacacataatgattctgttgaagacagtgtttctaaggcatctgaaaaggcatcatcttcattgtcgtcatcg |
35878156 |
T |
|
| Q |
118 |
tcatcctcttccaaattttgtagcttttcannnnnnngtcctttgtcatgatctactttattcataatgtcacttaaagaattcgatttacttgaggacc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| || ||||||||| ||||||||| || ||| |
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| T |
35878157 |
tcatcctcttccaaattttgtagcttttcatccttttgtcctttgtcatgatctactttattcatgatgttacctaaagaatttgatttacttaagcacc |
35878256 |
T |
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| Q |
218 |
taacctttt |
226 |
Q |
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||| ||||| |
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| T |
35878257 |
taaactttt |
35878265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 337
Target Start/End: Original strand, 24444711 - 24445030
Alignment:
| Q |
18 |
gtttgcatccaaattatccaaaccacttacacataatgattctgttgaagacagtgtttctaaggcatctgaaaaagcatcatcatcattgtcgtcatcg |
117 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24444711 |
gtttgcatccaaattatccaaaccacttacacataatgattctgttgaagacagtgtttctaaggcatctgaaaaagcatcatcatcattgtcgtcatcg |
24444810 |
T |
|
| Q |
118 |
tcatcctcttccaaattttgtagcttttcannnnnnngtcctttgtcatgatctactttattcataatgtcacttaaagaattcgatttacttgaggacc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||| |||||||||||| |||||||| |||||| |
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| T |
24444811 |
tcatcctcttccaaattttgtagcttttcatccttttgtcctttgttatgatctactttattcatgatgttacttaaagaatttgatttactcaaggacc |
24444910 |
T |
|
| Q |
218 |
taacctttttatcaagtttagatctactagggatatgctcccaattgaaagacgcaaaaacaggttctgttacttgatcttgagtcatgtctgatttgtt |
317 |
Q |
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||| ||| ||||||| ||||| | || ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
24444911 |
taaacttgttatcaaatttaggcccaccagggatatgctcccaattgaaagacacaaacacaggttctgttacttgatcttgagtcatgtctgatttgtt |
24445010 |
T |
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| Q |
318 |
gaatggaagagaattatcta |
337 |
Q |
| |
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| |||||||||||||||||| |
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| T |
24445011 |
gtatggaagagaattatcta |
24445030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 24452258 - 24452466
Alignment:
| Q |
18 |
gtttgcatccaaattatccaaaccacttacacataatgattctgttgaagacagtgtttctaaggcatctgaaaaagcatcatcatcattgtcgtcatcg |
117 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
24452258 |
gtttgcatccaaattatccaagccacttacacataatgattctgttgaagacagtgtttctaaggcatctgaaaaggcatcatcttcattgtcgtcatcg |
24452357 |
T |
|
| Q |
118 |
tcatcctcttccaaattttgtagcttttcannnnnnngtcctttgtcatgatctactttattcataatgtcacttaaagaattcgatttacttgaggacc |
217 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| || ||||||||| ||||||||| || ||| |
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| T |
24452358 |
tcatcctcttccaaattttgtagcttttcatccttttgtcctttgtcatgatctactttattcatgatgttacctaaagaatttgatttacttaagcacc |
24452457 |
T |
|
| Q |
218 |
taacctttt |
226 |
Q |
| |
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||| ||||| |
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|
| T |
24452458 |
taaactttt |
24452466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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