View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9357_high_17 (Length: 314)

Name: NF9357_high_17
Description: NF9357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9357_high_17
NF9357_high_17
[»] chr1 (13 HSPs)
chr1 (13-303)||(46341451-46341741)
chr1 (13-168)||(6562847-6563002)
chr1 (23-105)||(6562378-6562460)
chr1 (33-77)||(26606827-26606871)
chr1 (23-72)||(18609885-18609934)
chr1 (23-170)||(41909695-41909842)
chr1 (33-72)||(26770553-26770592)
chr1 (32-83)||(47586236-47586287)
chr1 (33-83)||(46217318-46217368)
chr1 (92-129)||(36184345-36184382)
chr1 (134-174)||(26354575-26354615)
chr1 (40-72)||(39895029-39895061)
chr1 (40-72)||(49502829-49502861)
[»] scaffold0341 (2 HSPs)
scaffold0341 (13-168)||(18037-18192)
scaffold0341 (23-105)||(17568-17650)
[»] chr3 (10 HSPs)
chr3 (23-167)||(30839150-30839294)
chr3 (43-144)||(34648214-34648315)
chr3 (29-72)||(6144294-6144337)
chr3 (33-72)||(19341594-19341633)
chr3 (135-170)||(52088097-52088132)
chr3 (33-83)||(14043898-14043948)
chr3 (23-71)||(7941996-7942044)
chr3 (40-72)||(21343501-21343533)
chr3 (32-72)||(50604419-50604459)
chr3 (23-71)||(51755840-51755888)
[»] chr8 (11 HSPs)
chr8 (23-162)||(32382646-32382783)
chr8 (23-162)||(32436601-32436738)
chr8 (13-94)||(32383185-32383266)
chr8 (13-94)||(32437140-32437221)
chr8 (32-109)||(40039683-40039760)
chr8 (23-171)||(7121776-7121924)
chr8 (33-72)||(2712436-2712475)
chr8 (23-78)||(34892799-34892854)
chr8 (40-105)||(5332593-5332658)
chr8 (23-72)||(13783098-13783147)
chr8 (23-72)||(16940266-16940315)
[»] chr7 (7 HSPs)
chr7 (112-171)||(38858002-38858061)
chr7 (32-83)||(48590338-48590389)
chr7 (115-169)||(38857040-38857094)
chr7 (23-72)||(38555403-38555452)
chr7 (33-81)||(19072462-19072510)
chr7 (40-104)||(22640674-22640738)
chr7 (96-172)||(38266164-38266240)
[»] chr5 (6 HSPs)
chr5 (23-72)||(42912868-42912917)
chr5 (122-167)||(34545175-34545220)
chr5 (58-105)||(34545687-34545734)
chr5 (40-110)||(39743155-39743225)
chr5 (32-72)||(13838423-13838463)
chr5 (40-72)||(20421950-20421982)
[»] chr6 (3 HSPs)
chr6 (33-78)||(3177581-3177626)
chr6 (23-72)||(9049074-9049123)
chr6 (23-71)||(35096673-35096721)
[»] chr4 (9 HSPs)
chr4 (29-70)||(42528904-42528945)
chr4 (35-82)||(9473663-9473710)
chr4 (92-171)||(52469102-52469181)
chr4 (33-78)||(9655909-9655954)
chr4 (33-86)||(19682111-19682164)
chr4 (23-72)||(48806519-48806568)
chr4 (54-118)||(44010552-44010616)
chr4 (115-171)||(55676970-55677026)
chr4 (43-83)||(55704754-55704794)
[»] chr2 (12 HSPs)
chr2 (33-82)||(31974247-31974296)
chr2 (40-144)||(17911135-17911239)
chr2 (23-71)||(28419442-28419490)
chr2 (126-170)||(41565287-41565331)
chr2 (43-82)||(4014288-4014327)
chr2 (126-173)||(16118976-16119023)
chr2 (23-69)||(29407009-29407055)
chr2 (23-129)||(29407877-29407983)
chr2 (43-72)||(9088746-9088775)
chr2 (23-72)||(33222650-33222699)
chr2 (31-72)||(41565352-41565393)
chr2 (32-72)||(40221129-40221169)


Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 13 - 303
Target Start/End: Complemental strand, 46341741 - 46341451
Alignment:
Q  13 aaaaacatcattgaagttcttcggcacttaactgccgaaattttcctcggtagttaactgtagtcgattttgaactgtctcgacagttaactgtcgagag 112  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||| |    
T  46341741 aaaaacatcattgaagttcttcggcacttaactgccgaagttttcctcggtagttaactgcagtcgattttgaactgtctcggcagttaactatcgaggg 46341642  T
Q  113 atatttgagtaacttacatgcgtttttcagccctatcaaatatgtcaacatcaattttctacatagaatcacatttcaccacctagataattatgttgat 212  Q
    |||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46341641 atatttgaataacttacatacgtttttcagccctatcaaatgtgtcaacatcaattttctacatagaatcacatttcaccacctagataattatgttgat 46341542  T
Q  213 acttttatgaagtaacataacaaagtcacataatgataggatgtactcccttcctacttataagacatttttaaacttttatttgtccttt 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46341541 acttttatgaagtaacataacaaagtcacataatgataggatgtactcccttcctacttataagacatttttaaacttttatttgtccttt 46341451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 13 - 168
Target Start/End: Original strand, 6562847 - 6563002
Alignment:
Q  13 aaaaacatcattgaagttcttcggcacttaactgccgaaattttcctcggtagttaactgtagtcgattttgaactgtctcgacagttaactgtcgagag 112  Q
    ||||||||||||||| |||||||||| ||||||| |||  ||||| |||||||||||||| || || |||||||| |||||| |||||||||| |||| |    
T  6562847 aaaaacatcattgaatttcttcggcagttaactgtcgaggttttcttcggtagttaactgcagccggttttgaaccgtctcggcagttaactgccgaggg 6562946  T
Q  113 atatttgagtaacttacatgcgtttttcagccctatcaaatatgtcaacatcaatt 168  Q
    |||||||  ||| ||||||| |||||||| ||||||||||| |||||||| |||||    
T  6562947 atatttggataatttacatgtgtttttcaaccctatcaaatgtgtcaacagcaatt 6563002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 23 - 105
Target Start/End: Complemental strand, 6562460 - 6562378
Alignment:
Q  23 ttgaagttcttcggcacttaactgccgaaattttcctcggtagttaactgtagtcgattttgaactgtctcgacagttaactg 105  Q
    |||||||||||||||| |||| || ||| ||||||||| ||||||||||||||||| |||| |||||| ||||||||||||||    
T  6562460 ttgaagttcttcggcagttaattgtcgagattttcctcagtagttaactgtagtcggttttaaactgtatcgacagttaactg 6562378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 26606871 - 26606827
Alignment:
Q  33 tcggcacttaactgccgaaattttcctcggtagttaactgtagtc 77  Q
    |||||| |||||||||||| |||||||||||||||||||||||||    
T  26606871 tcggcagttaactgccgaagttttcctcggtagttaactgtagtc 26606827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 18609885 - 18609934
Alignment:
Q  23 ttgaagttcttcggcacttaactgccgaaattttcctcggtagttaactg 72  Q
    ||||| ||| |||||| |||||||||||| ||||||||||||||||||||    
T  18609885 ttgaaattcctcggcagttaactgccgaagttttcctcggtagttaactg 18609934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 170
Target Start/End: Original strand, 41909695 - 41909842
Alignment:
Q  23 ttgaagttcttcggcacttaactgccgaaattttcctcggtagttaactgtagtcgattttgaactgtctcgacagttaactgtcga-gagatatttgag 121  Q
    ||||| ||| |||||| ||||||||||||||||||||||  ||||||||| || ||||| |  |   | |||||||||||||||||| |||  |||||||    
T  41909695 ttgaaattcctcggcagttaactgccgaaattttcctcgccagttaactgcagccgattctttaaaatttcgacagttaactgtcgatgag-catttgag 41909793  T
Q  122 taacttacatgcgtttttcagccctatcaaatatgtcaacatcaatttt 170  Q
    ||| |||  || ||||||||||| || ||||| |||  ||| |||||||    
T  41909794 taatttatttgtgtttttcagccttagcaaatgtgtatacaacaatttt 41909842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 72
Target Start/End: Original strand, 26770553 - 26770592
Alignment:
Q  33 tcggcacttaactgccgaaattttcctcggtagttaactg 72  Q
    |||||| ||||||||| |||||||||||||||||||||||    
T  26770553 tcggcagttaactgccaaaattttcctcggtagttaactg 26770592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 47586236 - 47586287
Alignment:
Q  32 ttcggcacttaactgccgaaattttcctcggtagttaactgtagtcgatttt 83  Q
    ||||||| |||||||||||  |||| ||||||||||||||| ||||||||||    
T  47586236 ttcggcagttaactgccgaggtttttctcggtagttaactgcagtcgatttt 47586287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 46217318 - 46217368
Alignment:
Q  33 tcggcacttaactgccgaaattttcctcggtagttaactgtagtcgatttt 83  Q
    |||||| |||||| ||||| |||||||||||||||||||| || |||||||    
T  46217318 tcggcagttaactaccgaagttttcctcggtagttaactgcagccgatttt 46217368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 36184345 - 36184382
Alignment:
Q  92 tcgacagttaactgtcgagagatatttgagtaacttac 129  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  36184345 tcgacagttaactgtcgagaggtatttgagtaatttac 36184382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 26354575 - 26354615
Alignment:
Q  134 gtttttcagccctatcaaatatgtcaacatcaattttctac 174  Q
    ||||||||||||||||| ||  |||||||||||||||||||    
T  26354575 gtttttcagccctatcatatgagtcaacatcaattttctac 26354615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 39895061 - 39895029
Alignment:
Q  40 ttaactgccgaaattttcctcggtagttaactg 72  Q
    |||||||||||| ||||||||||||||||||||    
T  39895061 ttaactgccgaagttttcctcggtagttaactg 39895029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 72
Target Start/End: Original strand, 49502829 - 49502861
Alignment:
Q  40 ttaactgccgaaattttcctcggtagttaactg 72  Q
    |||||||||||| ||||||||||||||||||||    
T  49502829 ttaactgccgaagttttcctcggtagttaactg 49502861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 13 - 168
Target Start/End: Original strand, 18037 - 18192
Alignment:
Q  13 aaaaacatcattgaagttcttcggcacttaactgccgaaattttcctcggtagttaactgtagtcgattttgaactgtctcgacagttaactgtcgagag 112  Q
    ||||||||||||||| |||||||||| ||||||| |||  ||||| |||||||||||||| || || |||||||| |||||| |||||||||| |||| |    
T  18037 aaaaacatcattgaatttcttcggcagttaactgtcgaggttttcttcggtagttaactgcagccggttttgaaccgtctcggcagttaactgccgaggg 18136  T
Q  113 atatttgagtaacttacatgcgtttttcagccctatcaaatatgtcaacatcaatt 168  Q
    |||||||  ||| ||||||| |||||||| ||||||||||| |||||||| |||||    
T  18137 atatttggataatttacatgtgtttttcaaccctatcaaatgtgtcaacagcaatt 18192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 23 - 105
Target Start/End: Complemental strand, 17650 - 17568
Alignment:
Q  23 ttgaagttcttcggcacttaactgccgaaattttcctcggtagttaactgtagtcgattttgaactgtctcgacagttaactg 105  Q
    |||||||||||||||| |||| || ||| ||||||||| ||||||||||||||||| |||| |||||| ||||||||||||||    
T  17650 ttgaagttcttcggcagttaattgtcgagattttcctcagtagttaactgtagtcggttttaaactgtatcgacagttaactg 17568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 6e-31; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 23 - 167
Target Start/End: Original strand, 30839150 - 30839294
Alignment:
Q  23 ttgaagttcttcggcacttaactgccgaaattttcctcggtagttaactgtagtcgattttgaactgtctcgacagttaactgtcgagagatatttgagt 122  Q
    |||||||||||||||| |||||||||||  ||||||| || ||||||||| || || |||||||||||||||||||||||||| |||||| |||||| ||    
T  30839150 ttgaagttcttcggcagttaactgccgaggttttccttgggagttaactgcagccggttttgaactgtctcgacagttaactgccgagaggtatttgggt 30839249  T
Q  123 aacttacatgcgtttttcagccctatcaaatatgtcaacatcaat 167  Q
    || ||||||| |||||| | || |||||||  |||||||| ||||    
T  30839250 aatttacatgtgttttttaaccatatcaaacgtgtcaacaacaat 30839294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 144
Target Start/End: Original strand, 34648214 - 34648315
Alignment:
Q  43 actgccgaaattttcctcggtagttaactgtagtcgattttgaactgtctcgacagttaactgtcgagagatatttgagtaacttacatgcgtttttcag 142  Q
    ||||||||  ||||||||||| |||||||| || || |||||||    |||||||||||||||  ||| | ||||||||||| ||||||| |||| ||||    
T  34648214 actgccgaggttttcctcggtcgttaactgcagccggttttgaagaaactcgacagttaactgctgaggggtatttgagtaaattacatgtgtttctcag 34648313  T
Q  143 cc 144  Q
    ||    
T  34648314 cc 34648315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 6144294 - 6144337
Alignment:
Q  29 ttcttcggcacttaactgccgaaattttcctcggtagttaactg 72  Q
    |||||||| | |||||||||||| ||||||||||||||||||||    
T  6144294 ttcttcggtagttaactgccgaagttttcctcggtagttaactg 6144337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 72
Target Start/End: Original strand, 19341594 - 19341633
Alignment:
Q  33 tcggcacttaactgccgaaattttcctcggtagttaactg 72  Q
    |||||| |||||||||||| ||||||||||||||||||||    
T  19341594 tcggcagttaactgccgaagttttcctcggtagttaactg 19341633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 135 - 170
Target Start/End: Original strand, 52088097 - 52088132
Alignment:
Q  135 tttttcagccctatcaaatatgtcaacatcaatttt 170  Q
    |||||||||||||||||||||||||||| |||||||    
T  52088097 tttttcagccctatcaaatatgtcaacaacaatttt 52088132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 14043898 - 14043948
Alignment:
Q  33 tcggcacttaactgccgaaattttcctcggtagttaactgtagtcgatttt 83  Q
    |||||| |||||||||||| |||||||||| ||||||||| || |||||||    
T  14043898 tcggcagttaactgccgaagttttcctcggcagttaactgcagccgatttt 14043948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 7941996 - 7942044
Alignment:
Q  23 ttgaagttcttcggcacttaactgccgaaattttcctcggtagttaact 71  Q
    ||||| ||| |||||| ||||||||||||||||| ||||| ||||||||    
T  7941996 ttgaaattcctcggcatttaactgccgaaattttgctcggcagttaact 7942044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 72
Target Start/End: Original strand, 21343501 - 21343533
Alignment:
Q  40 ttaactgccgaaattttcctcggtagttaactg 72  Q
    |||||||||||| ||||||||||||||||||||    
T  21343501 ttaactgccgaagttttcctcggtagttaactg 21343533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 50604419 - 50604459
Alignment:
Q  32 ttcggcacttaactgccgaaattttcctcggtagttaactg 72  Q
    ||||||| |||||||||||  ||||||||||||||||||||    
T  50604419 ttcggcagttaactgccgaggttttcctcggtagttaactg 50604459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 51755840 - 51755888
Alignment:
Q  23 ttgaagttcttcggcacttaactgccgaaattttcctcggtagttaact 71  Q
    ||||| |||||||||| |||||||||||| |||||||| | ||||||||    
T  51755840 ttgaaattcttcggcagttaactgccgaagttttcctctgcagttaact 51755888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 23 - 162
Target Start/End: Complemental strand, 32382783 - 32382646
Alignment:
Q  23 ttgaagttcttcggcacttaactgccgaaattttcctcggtagttaactgtagtcgattttgaactgtctcgacagttaactgtcgagagatatttgagt 122  Q
    ||||||||||||| || |||| ||||||  |||||||| ||||||||||| || || |||||||||||||||||||||||||| |||  | ||||||| |    
T  32382783 ttgaagttcttcgacagttaattgccgaggttttcctcagtagttaactgcagccggttttgaactgtctcgacagttaactgccgatgggtatttgaat 32382684  T
Q  123 aacttacatgcgtttttcagccctatcaaatatgtcaaca 162  Q
    |||||||||| ||||||| |  ||||||||| ||||||||    
T  32382683 aacttacatgtgtttttctg--ctatcaaatgtgtcaaca 32382646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 23 - 162
Target Start/End: Complemental strand, 32436738 - 32436601
Alignment:
Q  23 ttgaagttcttcggcacttaactgccgaaattttcctcggtagttaactgtagtcgattttgaactgtctcgacagttaactgtcgagagatatttgagt 122  Q
    ||||||||||||| || |||| ||||||  |||||||| ||||||||||| || || |||||||||||||||||||||||||| |||  | ||||||| |    
T  32436738 ttgaagttcttcgacagttaattgccgaggttttcctcagtagttaactgcagccggttttgaactgtctcgacagttaactgccgatgggtatttgaat 32436639  T
Q  123 aacttacatgcgtttttcagccctatcaaatatgtcaaca 162  Q
    |||||||||| ||||||| |  ||||||||| ||||||||    
T  32436638 aacttacatgtgtttttctg--ctatcaaatgtgtcaaca 32436601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 32383185 - 32383266
Alignment:
Q  13 aaaaacatcattgaagttcttcggcacttaactgccgaaattttcctcggtagttaactgtagtcgattttgaactgtctcg 94  Q
    |||||||||||||||||||||||||| |||||| ||||  |||||||||||||||||||| || ||||||||||||||||||    
T  32383185 aaaaacatcattgaagttcttcggcagttaactaccgaggttttcctcggtagttaactgcagccgattttgaactgtctcg 32383266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 32437140 - 32437221
Alignment:
Q  13 aaaaacatcattgaagttcttcggcacttaactgccgaaattttcctcggtagttaactgtagtcgattttgaactgtctcg 94  Q
    |||||||||||||||||||||||||| |||||| ||||  |||||||||||||||||||| || ||||||||||||||||||    
T  32437140 aaaaacatcattgaagttcttcggcagttaactaccgaggttttcctcggtagttaactgcagccgattttgaactgtctcg 32437221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 109
Target Start/End: Original strand, 40039683 - 40039760
Alignment:
Q  32 ttcggcacttaactgccgaaattttcctcggtagttaactgtagtcgattttgaactgtctcgacagttaactgtcga 109  Q
    ||||||| ||||||  |||  |||||||||||||||||||| ||||||||||| |||  |||||||||||||| ||||    
T  40039683 ttcggcagttaactatcgaggttttcctcggtagttaactgcagtcgattttggacttcctcgacagttaactatcga 40039760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 23 - 171
Target Start/End: Original strand, 7121776 - 7121924
Alignment:
Q  23 ttgaagttcttcggcacttaactgccgaaattttcctcggtagttaactgtagtcgattttgaactgtctcgacagttaactgtcgagagatatttgagt 122  Q
    ||||| ||| |||||| |||||||||||| |||||||| | ||||||||| || || || |  |   | |||||||||||||| ||||||  ||||||||    
T  7121776 ttgaaattcctcggcagttaactgccgaagttttcctcagcagttaactgcagccggttctttaaaatttcgacagttaactgccgagaggcatttgagt 7121875  T
Q  123 aacttacatgcgtttttcagccctatcaaatatgtcaacatcaattttc 171  Q
    || |||| || ||||||||||| || ||||| |||  ||| ||||||||    
T  7121876 aatttacttgtgtttttcagccttagcaaatgtgtatacaacaattttc 7121924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 72
Target Start/End: Complemental strand, 2712475 - 2712436
Alignment:
Q  33 tcggcacttaactgccgaaattttcctcggtagttaactg 72  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  2712475 tcggcagttaactgccgaaattttcctcggtagttaactg 2712436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 34892799 - 34892854
Alignment:
Q  23 ttgaagttcttcggcacttaactgccgaaattttcctcggtagttaactgtagtcg 78  Q
    ||||| ||| |||||| |||||||||||| |||||||||| ||||||||| |||||    
T  34892799 ttgaaattcctcggcagttaactgccgaagttttcctcggcagttaactgcagtcg 34892854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 105
Target Start/End: Original strand, 5332593 - 5332658
Alignment:
Q  40 ttaactgccgaaattttcctcggtagttaactgtagtcgattttgaactgtctcgacagttaactg 105  Q
    |||||||||||| |||||||||| | ||||||| || ||||||| || | |||||||| |||||||    
T  5332593 ttaactgccgaagttttcctcgggaattaactgcagccgatttttaaatttctcgacaattaactg 5332658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 13783098 - 13783147
Alignment:
Q  23 ttgaagttcttcggcacttaactgccgaaattttcctcggtagttaactg 72  Q
    ||||| ||||||| || |||||||||||| |||||||||| |||||||||    
T  13783098 ttgaaattcttcgacagttaactgccgaagttttcctcggcagttaactg 13783147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 16940266 - 16940315
Alignment:
Q  23 ttgaagttcttcggcacttaactgccgaaattttcctcggtagttaactg 72  Q
    ||||| ||| |||||| ||||||||||||||||||||||  |||||||||    
T  16940266 ttgaaattcctcggcagttaactgccgaaattttcctcgacagttaactg 16940315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 112 - 171
Target Start/End: Original strand, 38858002 - 38858061
Alignment:
Q  112 gatatttgagtaacttacatgcgtttttcagccctatcaaatatgtcaacatcaattttc 171  Q
    ||||||||  ||| ||||||| |||||||||||||||||||| |||||||||||||||||    
T  38858002 gatatttggataatttacatgtgtttttcagccctatcaaatgtgtcaacatcaattttc 38858061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 48590338 - 48590389
Alignment:
Q  32 ttcggcacttaactgccgaaattttcctcggtagttaactgtagtcgatttt 83  Q
    ||||||| ||||||||||| ||||||||||||||||||||| || |||||||    
T  48590338 ttcggcagttaactgccgagattttcctcggtagttaactgcagccgatttt 48590389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 169
Target Start/End: Complemental strand, 38857094 - 38857040
Alignment:
Q  115 atttgagtaacttacatgcgtttttcagccctatcaaatatgtcaacatcaattt 169  Q
    |||||| ||| ||||||| |||||||||||||||||||| |||||||| ||||||    
T  38857094 atttgaataatttacatgtgtttttcagccctatcaaatgtgtcaacaacaattt 38857040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 38555403 - 38555452
Alignment:
Q  23 ttgaagttcttcggcacttaactgccgaaattttcctcggtagttaactg 72  Q
    ||||| || ||||||| |||||||||||| |||||||||| |||||||||    
T  38555403 ttgaaatttttcggcagttaactgccgaagttttcctcggcagttaactg 38555452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 19072510 - 19072462
Alignment:
Q  33 tcggcacttaactgccgaaattttcctcggtagttaactgtagtcgatt 81  Q
    |||||| ||||||||| || |||||||||| |||||||||||| |||||    
T  19072510 tcggcagttaactgccaaagttttcctcggcagttaactgtagccgatt 19072462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 22640674 - 22640738
Alignment:
Q  40 ttaactgccgaaattttcctcggtagttaactgtagtcgattttgaactgtctcgacagttaact 104  Q
    |||| ||||||  |||| ||||||||||||||| ||| | |||||||||  ||||||||||||||    
T  22640674 ttaagtgccgaggtttttctcggtagttaactgcagttggttttgaacttcctcgacagttaact 22640738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 172
Target Start/End: Original strand, 38266164 - 38266240
Alignment:
Q  96 cagttaactgtcgagagatatttgagtaacttacatgcgtttttcagccctatcaaatatgtcaacatcaattttct 172  Q
    |||||||||| |||| || |||||||||| |||||||  ||||||||||  | ||||| |||  |||||||||||||    
T  38266164 cagttaactgccgagggacatttgagtaatttacatgtatttttcagcctaagcaaatgtgtatacatcaattttct 38266240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 42912868 - 42912917
Alignment:
Q  23 ttgaagttcttcggcacttaactgccgaaattttcctcggtagttaactg 72  Q
    ||||| |||||||||| |||||||||||| ||||||||||||||||||||    
T  42912868 ttgaaattcttcggcagttaactgccgaagttttcctcggtagttaactg 42912917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 167
Target Start/End: Complemental strand, 34545220 - 34545175
Alignment:
Q  122 taacttacatgcgtttttcagccctatcaaatatgtcaacatcaat 167  Q
    ||||||||||| |||||||||||||||||||| |||||||| ||||    
T  34545220 taacttacatgtgtttttcagccctatcaaatgtgtcaacagcaat 34545175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 105
Target Start/End: Original strand, 34545687 - 34545734
Alignment:
Q  58 ctcggtagttaactgtagtcgattttgaactgtctcgacagttaactg 105  Q
    ||||||||||||||| || || ||||||||||||||| ||||||||||    
T  34545687 ctcggtagttaactgcagccggttttgaactgtctcggcagttaactg 34545734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 110
Target Start/End: Original strand, 39743155 - 39743225
Alignment:
Q  40 ttaactgccgaaattttcctcggtagttaactgtagtcgattttgaactgtctcgacagttaactgtcgag 110  Q
    |||||||||||  |||||||||| ||||||||| |||||| ||| || |  |||| |||||||||||||||    
T  39743155 ttaactgccgaggttttcctcggcagttaactgcagtcgaatttcaaattcctcggcagttaactgtcgag 39743225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 13838423 - 13838463
Alignment:
Q  32 ttcggcacttaactgccgaaattttcctcggtagttaactg 72  Q
    ||||||| |||||||||||  ||||||||||||||||||||    
T  13838423 ttcggcagttaactgccgaggttttcctcggtagttaactg 13838463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 20421982 - 20421950
Alignment:
Q  40 ttaactgccgaaattttcctcggtagttaactg 72  Q
    |||||||||||| ||||||||||||||||||||    
T  20421982 ttaactgccgaagttttcctcggtagttaactg 20421950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 3177626 - 3177581
Alignment:
Q  33 tcggcacttaactgccgaaattttcctcggtagttaactgtagtcg 78  Q
    ||||||||||||||||||| |||||||||| |||||||| ||||||    
T  3177626 tcggcacttaactgccgaagttttcctcgggagttaactatagtcg 3177581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 9049074 - 9049123
Alignment:
Q  23 ttgaagttcttcggcacttaactgccgaaattttcctcggtagttaactg 72  Q
    ||||||||| |||||| |||||| ||||| ||||||||||||||||||||    
T  9049074 ttgaagttcctcggcagttaactaccgaagttttcctcggtagttaactg 9049123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 35096721 - 35096673
Alignment:
Q  23 ttgaagttcttcggcacttaactgccgaaattttcctcggtagttaact 71  Q
    ||||| |||||||||| |||||||||||| |||||||||| ||||||||    
T  35096721 ttgaaattcttcggcagttaactgccgaagttttcctcggcagttaact 35096673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 42528945 - 42528904
Alignment:
Q  29 ttcttcggcacttaactgccgaaattttcctcggtagttaac 70  Q
    |||||||||| |||||||||||| ||||||||||||||||||    
T  42528945 ttcttcggcagttaactgccgaagttttcctcggtagttaac 42528904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 9473663 - 9473710
Alignment:
Q  35 ggcacttaactgccgaaattttcctcggtagttaactgtagtcgattt 82  Q
    |||| |||||| |||||||||||||||||||||||||| || ||||||    
T  9473663 ggcagttaactaccgaaattttcctcggtagttaactgcagccgattt 9473710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 92 - 171
Target Start/End: Original strand, 52469102 - 52469181
Alignment:
Q  92 tcgacagttaactgtcgagagatatttgagtaacttacatgcgtttttcagccctatcaaatatgtcaacatcaattttc 171  Q
    |||| |||||||||| ||| |  |||||||||| ||||  | |||| ||||||  |||||||||||||||||||||||||    
T  52469102 tcgatagttaactgttgaggggcatttgagtaatttactcgtgtttctcagccaaatcaaatatgtcaacatcaattttc 52469181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 9655909 - 9655954
Alignment:
Q  33 tcggcacttaactgccgaaattttcctcggtagttaactgtagtcg 78  Q
    |||||| || ||||||||| |||||||||||||||||||| |||||    
T  9655909 tcggcagtttactgccgaagttttcctcggtagttaactgcagtcg 9655954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 19682111 - 19682164
Alignment:
Q  33 tcggcacttaactgccgaaattttcctcggtagttaactgtagtcgattttgaa 86  Q
    |||||| ||||||||| |||||||||||||  |||||||| || ||||||||||    
T  19682111 tcggcagttaactgccaaaattttcctcgggcgttaactgcagccgattttgaa 19682164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 48806568 - 48806519
Alignment:
Q  23 ttgaagttcttcggcacttaactgccgaaattttcctcggtagttaactg 72  Q
    ||||| ||| |||||| |||||||| |||||||||||||| |||||||||    
T  48806568 ttgaaattcctcggcagttaactgctgaaattttcctcggcagttaactg 48806519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 44010616 - 44010552
Alignment:
Q  54 tttcctcggtagttaactgtagtcgattttgaactgtctcgacagttaactgtcgagagatattt 118  Q
    ||||||||||||||||||| ||||| |||| ||||  | ||||||||||||  ||||| ||||||    
T  44010616 tttcctcggtagttaactgcagtcggttttaaacttccacgacagttaactaccgagaaatattt 44010552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 171
Target Start/End: Original strand, 55676970 - 55677026
Alignment:
Q  115 atttgagtaacttacatgcgtttttcagccctatcaaatatgtcaacatcaattttc 171  Q
    |||||||||| ||||||  |||| |||||||| | ||||||||||||| ||||||||    
T  55676970 atttgagtaatttacatttgtttctcagccctttgaaatatgtcaacagcaattttc 55677026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 83
Target Start/End: Original strand, 55704754 - 55704794
Alignment:
Q  43 actgccgaaattttcctcggtagttaactgtagtcgatttt 83  Q
    ||||||||||||| |||||||||||||||| ||||| ||||    
T  55704754 actgccgaaatttacctcggtagttaactgcagtcggtttt 55704794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 31974247 - 31974296
Alignment:
Q  33 tcggcacttaactgccgaaattttcctcggtagttaactgtagtcgattt 82  Q
    |||||| ||||||||||| ||||||||||||||||||||| || ||||||    
T  31974247 tcggcagttaactgccgagattttcctcggtagttaactgcagccgattt 31974296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 144
Target Start/End: Complemental strand, 17911239 - 17911135
Alignment:
Q  40 ttaactgccgaaattttcctcggtagttaactgtagtcgattttgaactgtctcgacagttaactgtcgagagatatttgagtaacttacatgcgttttt 139  Q
    |||||||| ||  |||||||||||| ||||||| || || ||||| |||  |||| ||||||||||||||  || |||| ||||  ||||||| ||||||    
T  17911239 ttaactgctgaggttttcctcggtaattaactgcagccggttttggacttcctcggcagttaactgtcgaaggacattttagtattttacatgtgttttt 17911140  T
Q  140 cagcc 144  Q
    |||||    
T  17911139 cagcc 17911135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 28419490 - 28419442
Alignment:
Q  23 ttgaagttcttcggcacttaactgccgaaattttcctcggtagttaact 71  Q
    ||||| ||| |||||| |||||||||||| |||||||||||||||||||    
T  28419490 ttgaaattcatcggcagttaactgccgaagttttcctcggtagttaact 28419442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 41565331 - 41565287
Alignment:
Q  126 ttacatgcgtttttcagccctatcaaatatgtcaacatcaatttt 170  Q
    ||||||| ||||||||||||||| |||| ||||||||||||||||    
T  41565331 ttacatgtgtttttcagccctattaaatgtgtcaacatcaatttt 41565287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 82
Target Start/End: Complemental strand, 4014327 - 4014288
Alignment:
Q  43 actgccgaaattttcctcggtagttaactgtagtcgattt 82  Q
    ||||||||| |||||||||||||||||||| |||||||||    
T  4014327 actgccgaagttttcctcggtagttaactgcagtcgattt 4014288  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 16119023 - 16118976
Alignment:
Q  126 ttacatgcgtttttcagccctatcaaatatgtcaacatcaattttcta 173  Q
    ||||||| ||||||||||||||||| || |||||||| ||||||||||    
T  16119023 ttacatgtgtttttcagccctatcatatgtgtcaacagcaattttcta 16118976  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 29407055 - 29407009
Alignment:
Q  23 ttgaagttcttcggcacttaactgccgaaattttcctcggtagttaa 69  Q
    ||||| |||||||||| |||||||||||| |||||||||| ||||||    
T  29407055 ttgaaattcttcggcagttaactgccgaagttttcctcggcagttaa 29407009  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 129
Target Start/End: Original strand, 29407877 - 29407983
Alignment:
Q  23 ttgaagttcttcggcacttaactgccgaaattttcctcggtagttaactgtagtcgattttgaactgtctcgacagttaactgtcgagagatatttgagt 122  Q
    ||||| ||| |||||| |||||||||||| ||||||||| |||||||||| || || || |  |   | |||||||||||||| |||| || ||||||||    
T  29407877 ttgaaattcctcggcagttaactgccgaagttttcctcgttagttaactgcagccggttctttaaaatttcgacagttaactgccgagggacatttgagt 29407976  T
Q  123 aacttac 129  Q
    || ||||    
T  29407977 aatttac 29407983  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 72
Target Start/End: Complemental strand, 9088775 - 9088746
Alignment:
Q  43 actgccgaaattttcctcggtagttaactg 72  Q
    ||||||||||||||||||||||||||||||    
T  9088775 actgccgaaattttcctcggtagttaactg 9088746  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 33222699 - 33222650
Alignment:
Q  23 ttgaagttcttcggcacttaactgccgaaattttcctcggtagttaactg 72  Q
    ||||| ||| |||||| |||||||||||| |||||||||| |||||||||    
T  33222699 ttgaaattcctcggcagttaactgccgaagttttcctcggcagttaactg 33222650  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 72
Target Start/End: Complemental strand, 41565393 - 41565352
Alignment:
Q  31 cttcggcacttaactgccgaaattttcctcggtagttaactg 72  Q
    |||||||| |||||||||||  ||||||||||||||||||||    
T  41565393 cttcggcagttaactgccgaggttttcctcggtagttaactg 41565352  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 40221129 - 40221169
Alignment:
Q  32 ttcggcacttaactgccgaaattttcctcggtagttaactg 72  Q
    ||||||| |||||||||||  ||||||||||||||||||||    
T  40221129 ttcggcagttaactgccgaggttttcctcggtagttaactg 40221169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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