View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9357_high_18 (Length: 301)
Name: NF9357_high_18
Description: NF9357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9357_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 19 - 289
Target Start/End: Original strand, 12039843 - 12040113
Alignment:
| Q |
19 |
ttacaatctcggattgtcctaatctaaatagttggtgggaaactgagatatgggataatgatagaccatgtttcagttgcatttccaaactaaatgtcca |
118 |
Q |
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||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
12039843 |
ttacaatctcggattgtccaaatctaaacagttggtgggaaactgagatatgggataatgatagaccatctttcagttgcatttccaaactaaatgtcca |
12039942 |
T |
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| Q |
119 |
atattgccccatgttagcttgcatgccactatatcctaatcttgatgatgagctcgttctggtggagtcaaacgtaaggtcaatgagggatacaatgcat |
218 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12039943 |
atattgccccaagttagcttgcatgccactatatcctaatcttgatgatgagctcgttctggtggagtcaaacgtaaggtcaatgagggatacaatgcat |
12040042 |
T |
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| Q |
219 |
tatgctgacagtaccgaatgcactgaaaattctaattcaaaaacacaacccttctccaaattgatgtccat |
289 |
Q |
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| T |
12040043 |
tatgctgacagtaccgaaagcactgaaaattctaattcacaatcacaacccttctccaaattgaagtccat |
12040113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 21 - 289
Target Start/End: Original strand, 11828924 - 11829192
Alignment:
| Q |
21 |
acaatctcggattgtcctaatctaaatagttggtgggaaactgagatatgggataatgatagaccatgtttcagttgcatttccaaactaaatgtccaat |
120 |
Q |
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|||||||| ||||||| ||| ||||| |||||||||||| ||| |||||||| ||||||||||||| ||||||||||||||| || |||||| |||||| |
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| T |
11828924 |
acaatctcagattgtcttaaactaaaaggttggtgggaaaatgacatatgggacaatgatagaccatctttcagttgcatttcaaagctaaatatccaat |
11829023 |
T |
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| Q |
121 |
attgccccatgttagcttgcatgccactatatcctaatcttgatgatgagctcgttctggtggagtcaaacgtaaggtcaatgagggatacaatgcatta |
220 |
Q |
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| T |
11829024 |
actgtcctcaattagcttgcatgctgctctatcccggtcttgatgatgagctcgttctggtggagtcgaacgtaagatcaatgagggatacaatgcatta |
11829123 |
T |
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| Q |
221 |
tgctgacagtaccgaatgcactgaaaattctaattcaaaaacacaacccttctccaaattgatgtccat |
289 |
Q |
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|||||||||||| ||| ||||||||| |||| |||| || ||||||||||||| ||||||| |||||| |
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| T |
11829124 |
tgctgacagtactgaaagcactgaaacatctagttcacaatcacaacccttctcgaaattgaagtccat |
11829192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 11901458 - 11901251
Alignment:
| Q |
19 |
ttacaatctcggattgtcctaatctaaatagttggtgggaaactgagatatgggataatgatagaccatgtttcagttgcatttccaaactaaatgtcca |
118 |
Q |
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||||||| ||||||||||||||||| || ||||||||||||| |||||| |||| |||||||||||||| ||||||||||||||| |||||||| |||| |
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| T |
11901458 |
ttacaatttcggattgtcctaatctgaaaagttggtgggaaaatgagatttggggtaatgatagaccatatttcagttgcatttcaaaactaaacatcca |
11901359 |
T |
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| Q |
119 |
atattgccccatgttagcttgcatgccactatatcctaatcttgatgatgagctcgttctggtggagtcaaacgtaaggtcaatgagggatacaatgcat |
218 |
Q |
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|| ||| || | |||||||||||||| ||||||||| ||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||||||||| |
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| T |
11901358 |
atgttgtcctaaattagcttgcatgcctctatatcctggtcttgatgatgagcttgttcttgtggagtcgaacgtaagatcaatgagggatacaatgcat |
11901259 |
T |
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| Q |
219 |
tatgctga |
226 |
Q |
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||||||| |
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| T |
11901258 |
catgctga |
11901251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 22 - 215
Target Start/End: Original strand, 11861057 - 11861250
Alignment:
| Q |
22 |
caatctcggattgtcctaatctaaatagttggtgggaaactgagatatgggataatgatagaccatgtttcagttgcatttccaaactaaatgtccaata |
121 |
Q |
| |
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||||||| ||||||||||||||||| ||||||||||||| || ||| |||| ||||||||||||| ||||||||||||||| || |||||| ||||||| |
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| T |
11861057 |
caatctcagattgtcctaatctaaaaagttggtgggaaaaagacatacgggaaaatgatagaccatctttcagttgcatttcaaagctaaatatccaata |
11861156 |
T |
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| Q |
122 |
ttgccccatgttagcttgcatgccactatatcctaatcttgatgatgagctcgttctggtggagtcaaacgtaaggtcaatgagggatacaatg |
215 |
Q |
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||| || |||||||| ||||||||||||||| ||||||||||||||||||| |||||||||| | ||||| ||||||| |||||||||| |
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| T |
11861157 |
ttgtcctcagttagcttccatgccactatatcccggtcttgatgatgagctcgttgtggtggagtcgagcgtaatatcaatgaaggatacaatg |
11861250 |
T |
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