View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9357_high_2 (Length: 547)
Name: NF9357_high_2
Description: NF9357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9357_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 1 - 533
Target Start/End: Original strand, 42161110 - 42161651
Alignment:
| Q |
1 |
tatatttcttttatagtagttagtaaaatgtatatatggattatatgtgagtgaacattttagcgaaactcacaacccactccagccagatatccttttg |
100 |
Q |
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| T |
42161110 |
tatatttcttttatagtagttagtaaaatgtatatatggattatatgtgagtgaacattttagtgaaactcacaacccactccagccagatatccttttg |
42161209 |
T |
|
| Q |
101 |
gcaatttggaaaacaacataagaggaaatggggtgtgctaactctaaacgtatagaagcaaccgcacccgccgtataccagccaccaccgacgagtttcg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42161210 |
gcaatttggaaaacaacataagaggaaatggggtgtgctaactctaaacgtatagaagcaaccgcacccgccgtataccagccaccaccgacgagtttcg |
42161309 |
T |
|
| Q |
201 |
cggtgttcgacataaacgctatcgaagagccatggctaaaacacctcaacaacaccaacaacaccatctcccaagaagaaaaacccgctctacctcctcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42161310 |
cggtgttcgacataaacgctatcgaagagccatggctaaaacacctcaacaacaccaacaacaccatctcccaagaagaaaaacccgctctacctcctcc |
42161409 |
T |
|
| Q |
301 |
tattctccacatcctcgatgctactgaaaaatctcctcaatcatgggatgaagttagcaaaacactccaacaactcaaaccagttgttcaacaacttcct |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42161410 |
tattctccacatcctcgatgctactgaaaaatctcctcaatcatgggatgaagttagcaaaacactccaacaactcaaaccagttgttcaacaacttcct |
42161509 |
T |
|
| Q |
401 |
caaccaa---------caccaccgtcatcaccaccgtctcaacaaccacaacctccacgtaaggttgcttcctttcacacacttgaagagttagatgcaa |
491 |
Q |
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||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42161510 |
caaccaacaccaccatcaccaccgtcatcaccaccgtcgcaacaaccacaacctccacgtaaggttgcttcctttcacacacttgaagagttagatgcaa |
42161609 |
T |
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| Q |
492 |
agtcaagcccaaagaagaaaaacgagtcccagtcaccaaaac |
533 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
42161610 |
agtcaagcccaaagaagaaaaacgagtcccagtcaccaaaac |
42161651 |
T |
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