View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9357_high_28 (Length: 212)
Name: NF9357_high_28
Description: NF9357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9357_high_28 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 6605467 - 6605283
Alignment:
| Q |
13 |
agcagagaaccatttacaaaatatgagaactataaaaactaaaaccaacgaaatcaaacataaagcaaggttagccatgacactacttagtttcagagat |
112 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6605467 |
agcaaagaaccatttacaaaatatgagaactataaaaactaaaaccaacgaaatcaaacataaagcaaggttagccatgacactacttagtttcagagat |
6605368 |
T |
|
| Q |
113 |
atgggnnnnnnngtaaaacaaagtggacatcaaacatataacatacatataggttcaaaaacgggtcattttgaagcttcattat |
197 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6605367 |
atgggaaaaaaagtaaaacaaagtggacatcaaacatataacatacatataggttcaaaaacgggtcattttgaagcttcattat |
6605283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 1379863 - 1379817
Alignment:
| Q |
36 |
tgagaactataaaaactaaaaccaacgaaatcaaacataaagcaagg |
82 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1379863 |
tgagaactataaaaactaaaaccaatgaaatcaaacataaagcaagg |
1379817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 110
Target Start/End: Complemental strand, 40909033 - 40908962
Alignment:
| Q |
38 |
agaactataaaaactaaaaccaacgaaatcaaacataaagcaaggttagccatgacactacttagtttcagag |
110 |
Q |
| |
|
||||| |||||||||||||| || ||||||||||||||||| | || ||||||| ||||| |||||||||||| |
|
|
| T |
40909033 |
agaacaataaaaactaaaac-aatgaaatcaaacataaagccatgtaagccatgtcactatttagtttcagag |
40908962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 136 - 197
Target Start/End: Complemental strand, 1379773 - 1379714
Alignment:
| Q |
136 |
tggacatcaaacatataacatacatataggttcaaaaacgggtcattttgaagcttcattat |
197 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||| | || ||||||||||||||||||| |
|
|
| T |
1379773 |
tggacatcaaacata--acatacatataggttcgaaagctggacattttgaagcttcattat |
1379714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 197
Target Start/End: Complemental strand, 3082167 - 3082110
Alignment:
| Q |
138 |
gacatcaaacatataacatacatataggttcaaaaacgggtcattttgaagcttcattat |
197 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||| | |||||||||||||||||||||| |
|
|
| T |
3082167 |
gacatcaaacata--acatacatataggttaaaaagctggtcattttgaagcttcattat |
3082110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 3082264 - 3082197
Alignment:
| Q |
44 |
ataaaaactaaaaccaacgaaatcaaacataaagcaaggttagccatgacactacttagtttcagagat |
112 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||| | || ||||||| ||||| |||||||||||||| |
|
|
| T |
3082264 |
ataaaaactaaaac-aatgaaatcaaacataaagccatgtaagccatgtcactatttagtttcagagat |
3082197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University