View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9357_high_3 (Length: 496)
Name: NF9357_high_3
Description: NF9357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9357_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Complemental strand, 36672601 - 36672123
Alignment:
| Q |
1 |
agaacaacacaaacaaaaacagattgaccgccatcacactcaactacaacattgaacaaaattttcaacactctcacacttcaaattaaacaaaatttca |
100 |
Q |
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| T |
36672601 |
agaacaacaaaaacaaaaacagattgaccgccatcacactcaactacaacattgaacaaaattttcaacactctcacacttcaaattaaacaaaatttca |
36672502 |
T |
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| Q |
101 |
attggatttttaatttcattttctttgctcaatggaacaagctacagtaggattaagtggatctattcacgacgattctgttcaatttgacgaagaaatt |
200 |
Q |
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| T |
36672501 |
attggatttttaatttcattttctttgctcaatggaacaagctacagtaggattaagtggatccattcacgacgattctgttcaatttgacgaagaaatt |
36672402 |
T |
|
| Q |
201 |
caaggaattatggttccggcgccggcaccggaaaacgcaagctcattcacagcactgttagagcttccacctacgctggcagttgagctacttcatttgc |
300 |
Q |
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| T |
36672401 |
caaggaattatgattccggcgccggcaccggaaaacgcaagctcattcacagcactgttagagcttccacctacgctggcggttgagctacttcatttgc |
36672302 |
T |
|
| Q |
301 |
ctgagcagaaaccctatcttccgaactcttctaacgggaatttaacctttcctactaacgccgcgttgattgaacgcgccgcgaaattctcagtgttcgc |
400 |
Q |
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| T |
36672301 |
ctgagcagaaaccctatcttccgaactcttctaacgggaatttaacttttcctactaacgccgcgttgattgaacgcgccgcgaaattctcagtgttcgc |
36672202 |
T |
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| Q |
401 |
gggagagaattcttcaccgggagattcgcggctgtttccggtggaaagtgtgaagaacgagcctcaagagactgattcg |
479 |
Q |
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| T |
36672201 |
cggagagaattcttcaccgggagattcgcggctgtttccggtggaaagtgtgaagaacgagcctcaagagactgattcg |
36672123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 412
Target Start/End: Original strand, 21508658 - 21508731
Alignment:
| Q |
339 |
aatttaacctttcctactaacgccgcgttgattgaacgcgccgcgaaattctcagtgttcgcgggagagaattc |
412 |
Q |
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|||||||| || ||| | |||||||||||| ||||||||||||| | |||||| || ||||| ||||| ||||| |
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| T |
21508658 |
aatttaactttcccttccaacgccgcgttggttgaacgcgccgctagattctccgttttcgccggagaaaattc |
21508731 |
T |
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