View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9357_high_6 (Length: 392)
Name: NF9357_high_6
Description: NF9357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9357_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 4 - 378
Target Start/End: Original strand, 3883594 - 3883967
Alignment:
| Q |
4 |
agtttcgtggtgtttgttcacttggagagaacgcatgcctgacattaaatcgagttatttctaatgtattgtagatttttaacttttgtatttttatgtt |
103 |
Q |
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| T |
3883594 |
agtttcgtggtgtttgttcacttggagagaacgcatgcctgacattaaatcgagttatttctaatgtattgtagatttttaacttttgtatttttgtgtt |
3883693 |
T |
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| Q |
104 |
tgtttggcatatagaaatgaggttatcttcatgcattgcaacaataagttatccttgttgtaaattttacatttcaatttgttgctgcatattttattct |
203 |
Q |
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| T |
3883694 |
tgtttggcatatagaaatgaggttatcttcatgcattgtaacaataagttatccttgttgtaaattttacatttcaatttgttgctgcatattttattct |
3883793 |
T |
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| Q |
204 |
gaactggtctgaagaataagtgcctgtttgatcttacattttacgatggatgcggcgtatttacatttatagtttgatattgcctgtttctataacatga |
303 |
Q |
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| T |
3883794 |
gaactggtctgaagaataggtgcctgtttgatcttacattttacgatggatgcgg-gtatttacatttatagtttgatattgcctgtttctttaacatga |
3883892 |
T |
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| Q |
304 |
atgcatatttacaattatattttgatgaaattttcatatatgcacatgatcaaatggaatcagtgtgcatgaact |
378 |
Q |
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| T |
3883893 |
atgcatatttacaattatattttgatgaaattttcatatatgcacgagatcaaatggaatcagtgtgcatgaact |
3883967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 5 - 236
Target Start/End: Original strand, 3870180 - 3870420
Alignment:
| Q |
5 |
gtttcgtggtgtttgttcacttggagagaacgcatgcctgacattaaatcgagttatttctaatgtattgtagatttttaacttttgtatttttatgttt |
104 |
Q |
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| T |
3870180 |
gttttgtggtgcttgttcactcggagagaaggcacacttggcaataaatcgggttattcctaatgtattgtaaattgttatcttttatattgtt--gttt |
3870277 |
T |
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| Q |
105 |
gtttggcatatagaaatgaggttatcttcatgcattgcaacaataag-----------ttatccttgttgtaaattttacatttcaatttgttgctgcat |
193 |
Q |
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| T |
3870278 |
gtttggcatatagaaatgaggttatcttcatgcattgccacaataagtttttgatgttttttacttgttgtaaattttatatttcaatttgttgctgcat |
3870377 |
T |
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| Q |
194 |
attttattctgaactggtctgaagaataagtgcctgtttgatc |
236 |
Q |
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| T |
3870378 |
attgtattctgaaatgttctgaagaataggtgtttgtttgatc |
3870420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 213 - 362
Target Start/End: Original strand, 3870464 - 3870612
Alignment:
| Q |
213 |
tgaagaataagtgcctgtttgatcttacattttacgatggatgcggcgtatttacatttatagtttgatattgcctgtttctataacatgaatgcatatt |
312 |
Q |
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| T |
3870464 |
tgaagaatagatgcttgtttgaacttacattttgcgatggttg-gacgaattg-catttgtagtttgatactgtctgtttcttta-catgattgcatatt |
3870560 |
T |
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| Q |
313 |
tacaattata--ttttgatgaaattttcatatatgcacatgatcaaatggaa |
362 |
Q |
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| T |
3870561 |
tacaattatatattttgatgaaattttaatatatgcacaacatcaaatggaa |
3870612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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