View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9357_high_8 (Length: 371)
Name: NF9357_high_8
Description: NF9357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9357_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 5 - 354
Target Start/End: Complemental strand, 8032447 - 8032096
Alignment:
| Q |
5 |
tttggtgttatacttaagtgta-gagaacaacccaccaacgctaaagactagtcaattaggttgaagagtctcatgactttcattatattggtattgagc |
103 |
Q |
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| T |
8032447 |
tttggtgttatacttaagtgtatgagaacaacccaccaacactaaagactagtcaattaggttgaagagtctcatgactttcattatatcagtattgagc |
8032348 |
T |
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| Q |
104 |
cgaagatagctcttcgttttttatctaacaatgactgtcactataatgacatcgaaccaatgattgtccttttgcttttgatgtcttcacttatgtatca |
203 |
Q |
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| T |
8032347 |
cgaagatagctcttcaatttttatctaacaatgactttcactataatgacatcgaaccagtgattgtccttttgcttttgacgccttcaattatgtatca |
8032248 |
T |
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| Q |
204 |
gtattcaatcgtgaaccttaatcgagtagttctcgtgg-cccactctcaaataaaacatcaattgttaggatataacaactcataagactaatcaattat |
302 |
Q |
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| T |
8032247 |
gtattcaatcgcgaaccttaatcgagtaattctcgtggccccactctcaaataaaacatcaattgttaggatataacaactcataagactaatcaattat |
8032148 |
T |
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| Q |
303 |
gtgggtgcgactcgtgacttaactctgaaattgaatattttatctgttcaat |
354 |
Q |
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| T |
8032147 |
gtgggtgcgactcgtgacttaactctgaaattgaatattttatccgttcaat |
8032096 |
T |
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