View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9357_low_104 (Length: 210)
Name: NF9357_low_104
Description: NF9357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9357_low_104 |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 10 - 195
Target Start/End: Original strand, 3430156 - 3430350
Alignment:
| Q |
10 |
agaagcaaaggcatttgaaaatgtttgaggtcggaaaagtgttcctcctcttccacttctgaaagaatattgagcaaagagaccaacac---------ca |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3430156 |
agaaacaaaggcatttgaaaatgtttgaggtcggaaaagtgttcctcctcttccacttctgaaagaatattgagcaaagagaccaacaccatcatcatca |
3430255 |
T |
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| Q |
101 |
tcatcatcatcttcatgaataagatttcctcgtgaaattagcagtggcgctgatgagcagcgtttcaaggtattgatcaattttgacttattctt |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3430256 |
tcatcatcatcttcatgaataagatttcctcgtgaaatcagcagtggcgctgatgagcagcgtttcaaggtattgatcaattttgacttattctt |
3430350 |
T |
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