View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9357_low_11 (Length: 437)
Name: NF9357_low_11
Description: NF9357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9357_low_11 |
 | |
|
| [»] scaffold0625 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 11 - 423
Target Start/End: Original strand, 32906883 - 32907277
Alignment:
| Q |
11 |
cagagattggccgccactgctctttcttccttcagcgaatattcatattccttcaacaaccatactcaattcactcctacaactacatattccagtgnnn |
110 |
Q |
| |
|
||||||||||||||||||| ||||| ||| |||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
32906883 |
cagagattggccgccactgatctttgttcattcaacgaatattcattttccttcaacaaacatactcaattcactcctacaactacatattccagcgatt |
32906982 |
T |
|
| Q |
111 |
nnnnnnnnnnga-ccgcatcccccttcagtctctgacctctctctacaagtttccttcaccgccgcctcttcagccttaccccataatccaacttctact |
209 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
32906983 |
tttaattttttaaccgcatcccccttcagtctctgacctctctctacaggtttccttcaccgctgcctcttcagccttaccccataatccaacttctact |
32907082 |
T |
|
| Q |
210 |
tccaccatgtagccgcagttgccggtgatgcgatcagcctcgcggctgcgtcatcaccaaaccgatcgggttctttgttgtcaccaccacccacgatggt |
309 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32907083 |
tccaccatgtagttgcggttgccggtgatgcgatcagcctcgcggctgcgtcatcaccaaaccgatcgggttctttgttgtcaccaccacccacgatggt |
32907182 |
T |
|
| Q |
310 |
gtttcgaggttctgacttggttcctacaaacgtaccctgcttttggtttctcattcgcggtggttcgttcaaaatctaggcttttgatctggatttggtc |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
32907183 |
-------------------gttcctacaaacgtaccctgcttttggtttctcattcgcggtggttcgttcaaaatctaggcttttgatttggatttggtc |
32907263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 12 - 423
Target Start/End: Original strand, 13433857 - 13434271
Alignment:
| Q |
12 |
agagattggccgccactgctc-tttcttccttcagcgaatattcatattccttcaacaaccatactcaattcactcctacaactacatattccagtgnnn |
110 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
13433857 |
agagattggccgccactgctcctttcttccttcagcgaatattcattttccttcaacaaccatactcaattcactccttcaactacatattcccgtgatt |
13433956 |
T |
|
| Q |
111 |
nnnnnnnnnn-gaccgcatcccccttcagtctctgacctctctctacaagtttccttcaccgccgcctc-ttcagccttaccccataatccaacttctac |
208 |
Q |
| |
|
||||||| |||||| || |||||||||||||||||| |||||||||||||||||| | ||||| |||||||||||||||||||||| | |
|
|
| T |
13433957 |
tttggttttttgaccgcaaccccctctagcctctgacctctctctacaggtttccttcaccgccgcccccttcagacttaccccataatccaacttcttc |
13434056 |
T |
|
| Q |
209 |
ttccaccatgtagccgcagttgccggtgatgcgatcagcctcgcggctgcgtcatcaccaaaccgatcgggttctttgttgtcaccaccacccacgatgg |
308 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||| | ||| |
|
|
| T |
13434057 |
ttccaccatgtagccgcactttccggtgatgcgatcagcctcgcggctgcgtcatcaccaaaccagtcggtttctttgttgtcactgccacccatggtgg |
13434156 |
T |
|
| Q |
309 |
tgtttcgaggttctgacttggttcctacaaacgtaccctgcttttggtttctcattcgcggtggttcgttcaaaatctaggcttttgatctggatttggt |
408 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
13434157 |
tgtttcgaggttctgatttggttcctacaaacgtgccctgcttttgatttctcattcacggtggttcgtttaaaatctaggcttttgatctggatttggt |
13434256 |
T |
|
| Q |
409 |
ctcaaaggtggtggt |
423 |
Q |
| |
|
||||| || |||||| |
|
|
| T |
13434257 |
ctcaatggcggtggt |
13434271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 346 - 421
Target Start/End: Complemental strand, 8016918 - 8016843
Alignment:
| Q |
346 |
ctgcttttggtttctcattcgcggtggttcgttcaaaatctaggcttttgatctggatttggtctcaaaggtggtg |
421 |
Q |
| |
|
||||||||||||||||||| | |||||| | ||||||||| || ||||||||||||||||||||||||| ||||| |
|
|
| T |
8016918 |
ctgcttttggtttctcatttgtggtggtccagtcaaaatctgggtttttgatctggatttggtctcaaagatggtg |
8016843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 243; Significance: 1e-134; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 121 - 423
Target Start/End: Complemental strand, 28088526 - 28088224
Alignment:
| Q |
121 |
gaccgcatcccccttcagtctctgacctctctctacaagtttccttcaccgccgcctcttcagccttaccccataatccaacttctacttccaccatgta |
220 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
28088526 |
gaccgcatcccccttcagtctttgacctctctctacaagtttccttcaccgccgctccttcagccttaccccacaatccaacttctacttccaccatgta |
28088427 |
T |
|
| Q |
221 |
gccgcagttgccggtgatgcgatcagcctcgcggctgcgtcatcaccaaaccgatcgggttctttgttgtcaccaccacccacgatggtgtttcgaggtt |
320 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||| ||||||||||||| | |
|
|
| T |
28088426 |
gccgcggttgtcggtgatgcgatcagcctcgcggctgcgtcatcaccaaaccggtcggtttctttgttgtcactgccacccacggtggtgtttcgaggct |
28088327 |
T |
|
| Q |
321 |
ctgacttggttcctacaaacgtaccctgcttttggtttctcattcgcggtggttcgttcaaaatctaggcttttgatctggatttggtctcaaaggtggt |
420 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
28088326 |
ctgacttggttcctacaaacgtgccctgcttttggtttctcattcgcgatggttcgttcaaaatctaggcttttgatctggatttggtctcaaaggcggt |
28088227 |
T |
|
| Q |
421 |
ggt |
423 |
Q |
| |
|
||| |
|
|
| T |
28088226 |
ggt |
28088224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 275 - 416
Target Start/End: Complemental strand, 18996254 - 18996112
Alignment:
| Q |
275 |
tcgggttctttgttgtcaccaccacccacgatggtgtttcgaggttctgacttggttcct-acaaacgtaccctgcttttggtttctcattcgcggtggt |
373 |
Q |
| |
|
|||| ||||||| |||||| |||||||| ||||||| |||||| ||| |||||| || | ||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
18996254 |
tcggtttctttggtgtcactgtcacccacggtggtgttctgaggttttgatttggtttcttaaaaacgagccctgcttttggtttctcattcgcagtggt |
18996155 |
T |
|
| Q |
374 |
tcgttcaaaatctaggcttttgatctggatttggtctcaaagg |
416 |
Q |
| |
|
|| |||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
18996154 |
tcattcaaaatataggcttttgatatggatttggtctcaaagg |
18996112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 163 - 272
Target Start/End: Complemental strand, 18951715 - 18951604
Alignment:
| Q |
163 |
ccttcaccgccgcc-tcttcagccttaccccata-atccaacttctacttccaccatgtagccgcagttgccggtgatgcgatcagcctcgcggctgcgt |
260 |
Q |
| |
|
|||||||||||||| |||||||||||||||| | ||| || |||| |||||||||||||||||| ||| ||| ||| |||||||||||||| ||||| |
|
|
| T |
18951715 |
ccttcaccgccgccctcttcagccttacccccttcatctaaattcttcttccaccatgtagccgcggttaccgccaatgtgatcagcctcgcggttgcgt |
18951616 |
T |
|
| Q |
261 |
catcaccaaacc |
272 |
Q |
| |
|
||| |||||||| |
|
|
| T |
18951615 |
cataaccaaacc |
18951604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0625 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0625
Description:
Target: scaffold0625; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 275 - 416
Target Start/End: Original strand, 402 - 544
Alignment:
| Q |
275 |
tcgggttctttgttgtcaccaccacccacgatggtgtttcgaggttctgacttggttcct-acaaacgtaccctgcttttggtttctcattcgcggtggt |
373 |
Q |
| |
|
|||| ||||||| |||||| |||||||| ||||||| |||||| ||| |||||| || | ||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
402 |
tcggtttctttggtgtcactgtcacccacggtggtgttctgaggttttgatttggtttcttaaaaacgagccctgcttttggtttctcattcgcagtggt |
501 |
T |
|
| Q |
374 |
tcgttcaaaatctaggcttttgatctggatttggtctcaaagg |
416 |
Q |
| |
|
|| |||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
502 |
tcattcaaaatataggcttttgatatggatttggtctcaaagg |
544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 202 - 273
Target Start/End: Complemental strand, 8071008 - 8070937
Alignment:
| Q |
202 |
cttctacttccaccatgtagccgcagttgccggtgatgcgatcagcctcgcggctgcgtcatcaccaaaccg |
273 |
Q |
| |
|
||||| |||||| ||||||| ||| |||||||||||||||||||||| | | ||||||||||||||||||| |
|
|
| T |
8071008 |
cttcttcttccatcatgtagtcgcgattgccggtgatgcgatcagccttgtgactgcgtcatcaccaaaccg |
8070937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University