View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9357_low_12 (Length: 435)
Name: NF9357_low_12
Description: NF9357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9357_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 247 - 425
Target Start/End: Complemental strand, 40366637 - 40366454
Alignment:
| Q |
247 |
caatcttctcgcaagataatacaattatcaaacacttgataagagatcaaagaagaaatttaaggtgtttttctttgacaaaaaataaaatttaaggtat |
346 |
Q |
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| T |
40366637 |
caatcttctcccaagataatacaattatcaaacacttgataagaaatcaaagaagcaatttaaggtgtttttctttgacaaaaaataaaatttaaggtgt |
40366538 |
T |
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| Q |
347 |
tgagtacatgatttttaaaatatcttc-----nnnnnnnnnnaatttacaagtgtcttgaatacacttgttaatattttctctg |
425 |
Q |
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| T |
40366537 |
tgagtacatgatttttaaaatatcttcttctttttttcctttaatttacaagtgtcttgaatacacttgttaacattttctctg |
40366454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 6 - 120
Target Start/End: Complemental strand, 40366842 - 40366724
Alignment:
| Q |
6 |
actatttaggagcatacacataaatagaaagaaaaggtaaaattacgaatcgag---nnnnnnnnncgtattaatgaaataattatttaatacttctcag |
102 |
Q |
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| T |
40366842 |
actatttaggagcatacacataaatagaaagaaaaggtaaaattaagaatcgagtttttttttttttgtattaatgaaataattatttaatacctctcag |
40366743 |
T |
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| Q |
103 |
gaaaagta-ttaatatgta |
120 |
Q |
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| T |
40366742 |
gaaaagtatttaatatgta |
40366724 |
T |
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