View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9357_low_13 (Length: 434)
Name: NF9357_low_13
Description: NF9357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9357_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 19 - 391
Target Start/End: Complemental strand, 45777348 - 45776976
Alignment:
| Q |
19 |
tataaagtaaactataaacatatgaaaaattgattttacaaattaattaggtggtaaacaacattttaacacttcatgaagtgaaactgaatttgtgtat |
118 |
Q |
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| T |
45777348 |
tataaagtaaactataaagatttgaaaaattgattttacaaattaattaggtggtaaacaacattttaacacttcatgaagtgaaactgaatttgtgtat |
45777249 |
T |
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| Q |
119 |
gagattttgttcacatttacagaaacctaaaattaattttcttgttcacaattgctttatacagaaattcaagatgtggtgttggttattaaaccttgcg |
218 |
Q |
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| T |
45777248 |
gagattttgttcacatttacagaaacccaaaattaattttcttgttcacaattgctttatacagaaattcaagatgtggtgttggttattaaaccttgcg |
45777149 |
T |
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| Q |
219 |
ggcaagcagggctaacaagggtggtttgctattgagactcatttcaagaaatgcaattgattactacaggaaacgctccttaatttgcaccattatgtta |
318 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
45777148 |
ggcaagcagggctaacaagcgtggtttgctattgagactcatttcaagaaatgcaattgattactactggaaacgctccttaatttgcaccattatgtta |
45777049 |
T |
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| Q |
319 |
acctattggagatcattcataattatatgaagaaggattgaattttactatccatcatactctttgggaggat |
391 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45777048 |
acctattagagatcattcataattatatgaagaaggattgaattttactatccatcatactctttgggaggat |
45776976 |
T |
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