View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9357_low_16 (Length: 418)

Name: NF9357_low_16
Description: NF9357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9357_low_16
NF9357_low_16
[»] chr1 (12 HSPs)
chr1 (1-292)||(35215815-35216104)
chr1 (293-400)||(35215616-35215723)
chr1 (1-122)||(35190371-35190492)
chr1 (16-128)||(35147357-35147472)
chr1 (142-233)||(35207781-35207872)
chr1 (10-114)||(35208145-35208253)
chr1 (196-233)||(35247611-35247648)
chr1 (170-221)||(35189915-35189966)
chr1 (231-265)||(35207674-35207708)
chr1 (8-41)||(35281402-35281435)
chr1 (189-233)||(35199449-35199493)
chr1 (72-120)||(35199933-35199981)
[»] chr3 (1 HSPs)
chr3 (83-119)||(53924390-53924426)


Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 35216104 - 35215815
Alignment:
Q  1 gagatcagagagttcttcaattcaggccaagaagatgaagtcccgatgaatgttaagcagagagattattggaagaatgatctcttgcttgcaggaatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  35216104 gagatcagagagttcttcaattcaggccaagaagatgaagtcctgatgaatgttaagcagagagattattggaagaaagatctcttgcttgcaggaatag 35216005  T
Q  101 aagttaggcctaagtaagaccagtaagctggaacataaaacgaagaaggaccgacactccattccgcattcactagtctgtgatagaatgtgcttgagta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35216004 aagttaggcctaagtaagaccagtaagctggaacataaaacgaagaaggaccgacactccattccgcattcactagtctgtgatagaatgtgcttgagta 35215905  T
Q  201 acaatattgattaaaatggaaccaatgccttaatggtatgaatgaattaaaatataaatctaagtacagaagactaaaaagactccatttaa 292  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35215904 acaatattgatt-aaatggaaccaatg-cttaatggtatgaatgaattaaaatataaatctaagtacagaagactaaaaagactccatttaa 35215815  T

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Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 293 - 400
Target Start/End: Complemental strand, 35215723 - 35215616
Alignment:
Q  293 tgatagaattatgatgagcaattgtgatttggccaaagctacattttagagtttttacaaaatcacgatgttaaggtgatttcaagaaactcaaatggga 392  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  35215723 tgatagaattacgatgagcaattgtgatttggccaatgctacattttagagtttttacaaaatcatgatgttaaggtgatttcaagtaactcaaatggga 35215624  T
Q  393 taccatac 400  Q
    ||||||||    
T  35215623 taccatac 35215616  T

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Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 35190492 - 35190371
Alignment:
Q  1 gagatcagagagttcttcaattcaggccaagaagatgaagtcccgatgaatgttaagcagagagattattggaagaatgatctcttgcttgcaggaatag 100  Q
    |||||| ||||||||||||||||||||| ||||||||||||||  |||||||||||| ||| | || |||||||||  | |||||| |||| ||||||||    
T  35190492 gagatcggagagttcttcaattcaggcctagaagatgaagtccaaatgaatgttaaggagacaaataattggaagagaggtctctttcttgaaggaatag 35190393  T
Q  101 aagttaggcctaagtaagacca 122  Q
    ||||||||||||||||||||||    
T  35190392 aagttaggcctaagtaagacca 35190371  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 128
Target Start/End: Complemental strand, 35147472 - 35147357
Alignment:
Q  16 ttcaattcaggccaagaagatgaag---tcccgatgaatgttaagcagagagattattggaagaatgatctcttgcttgcaggaatagaagttaggccta 112  Q
    ||||||||||||| |||||||| ||   ||| ||||||||||||| ||| | || ||||||||| || ||||||  ||| ||||||||||||||||||||    
T  35147472 ttcaattcaggcctagaagatggagacgtcctgatgaatgttaaggagacaaataattggaagagtggtctctttgttgaaggaatagaagttaggccta 35147373  T
Q  113 agtaagaccagtaagc 128  Q
    |||||||||| |||||    
T  35147372 agtaagaccattaagc 35147357  T

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Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 142 - 233
Target Start/End: Complemental strand, 35207872 - 35207781
Alignment:
Q  142 gaagaaggaccgacactccattccgcattcactagtctgtgatagaatgtgcttgagtaacaatattgattaaaatggaaccaatgccttaa 233  Q
    ||||||||| |||| |||| | | |||  ||||||||||||||||| ||||||| |||||||||||||||| |||||||| |||||||||||    
T  35207872 gaagaaggatcgactctccttccggcaggcactagtctgtgatagactgtgcttaagtaacaatattgatttaaatggaagcaatgccttaa 35207781  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 10 - 114
Target Start/End: Complemental strand, 35208253 - 35208145
Alignment:
Q  10 gagttcttcaattca-ggccaagaagatgaagtcccgatgaatgttaagcagagagattattggaagaatgatctcttgcttgcagg---aatagaagtt 105  Q
    ||||||||||||||| |||| |||||| ||||||| ||||||||||||| ||| | ||||||||||||| | |||||| || | |||   ||||||||||    
T  35208253 gagttcttcaattcatggcctagaagaagaagtccagatgaatgttaaggagacaaattattggaagaaaggtctctttctagaaggaataatagaagtt 35208154  T
Q  106 aggcctaag 114  Q
    |||||||||    
T  35208153 aggcctaag 35208145  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 196 - 233
Target Start/End: Original strand, 35247611 - 35247648
Alignment:
Q  196 gagtaacaatattgattaaaatggaaccaatgccttaa 233  Q
    |||||||||||||||||||||| |||||||||||||||    
T  35247611 gagtaacaatattgattaaaatagaaccaatgccttaa 35247648  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 170 - 221
Target Start/End: Complemental strand, 35189966 - 35189915
Alignment:
Q  170 tcactagtctgtgatagaatgtgcttgagtaacaatattgattaaaatggaa 221  Q
    |||||||| |||||||||  |||||||||||||| |||||||| ||||||||    
T  35189966 tcactagtttgtgatagatcgtgcttgagtaacagtattgatttaaatggaa 35189915  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 265
Target Start/End: Complemental strand, 35207708 - 35207674
Alignment:
Q  231 taatggtatgaatgaattaaaatataaatctaagt 265  Q
    |||| ||||||||||||||||||||||||||||||    
T  35207708 taatagtatgaatgaattaaaatataaatctaagt 35207674  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 41
Target Start/End: Complemental strand, 35281435 - 35281402
Alignment:
Q  8 gagagttcttcaattcaggccaagaagatgaagt 41  Q
    ||||||||||||||||||||| ||||||||||||    
T  35281435 gagagttcttcaattcaggcctagaagatgaagt 35281402  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 35199493 - 35199449
Alignment:
Q  189 tgtgcttgagtaacaatattgattaaaatggaaccaatgccttaa 233  Q
    |||||||||||||||||||||||| || ||||| ||||| |||||    
T  35199493 tgtgcttgagtaacaatattgatttaagtggaagcaatgtcttaa 35199449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 35199981 - 35199933
Alignment:
Q  72 gaagaatgatctcttgcttgcaggaatagaagttaggcctaagtaagac 120  Q
    ||||| || |||||| |||| |||||||||||| |||||||||||||||    
T  35199981 gaagagtggtctctttcttgaaggaatagaagtcaggcctaagtaagac 35199933  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 119
Target Start/End: Original strand, 53924390 - 53924426
Alignment:
Q  83 tcttgcttgcaggaatagaagttaggcctaagtaaga 119  Q
    |||| |||| |||||||||||||||||||||||||||    
T  53924390 tctttcttgaaggaatagaagttaggcctaagtaaga 53924426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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