View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9357_low_18 (Length: 406)

Name: NF9357_low_18
Description: NF9357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9357_low_18
NF9357_low_18
[»] chr8 (3 HSPs)
chr8 (1-231)||(18106893-18107123)
chr8 (225-303)||(18082610-18082688)
chr8 (48-83)||(18107108-18107143)
[»] chr4 (2 HSPs)
chr4 (71-209)||(37876249-37876388)
chr4 (225-275)||(37875737-37875787)
[»] chr2 (2 HSPs)
chr2 (71-209)||(23895293-23895432)
chr2 (225-278)||(23895894-23895947)


Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 18107123 - 18106893
Alignment:
Q  1 gggaatataaaatcagtcattcataaaaactattgtctaaaatagagaagctgaactatgtatgctgaggaatataaaatcagacatcataaagcttccc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18107123 gggaatataaaatcagtcattcataaaaactattgtctaaaatagagaagctgaactatgtatgctgaggaatataaaatcagacatcataaagcttccc 18107024  T
Q  101 ttttatgcgcataacacctatatcataaagcttaatagttaaactgagcaatatgaagacccccatatagaaaaggtataatgccggtgtgcaaaggaac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  18107023 ttttatgcgcataacacctatatcataaagcttaatagttaaactgagcaatatgaagactcccacatagaaaaggtataatgccggtgtgcaaaggaac 18106924  T
Q  201 acacagaccgaaatgaaacctataatggagt 231  Q
    |||||||||||||||||||||||||| ||||    
T  18106923 acacagaccgaaatgaaacctataattgagt 18106893  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 225 - 303
Target Start/End: Complemental strand, 18082688 - 18082610
Alignment:
Q  225 atggagtatagaactctggaactagtcacatgtgcagctgccacacatacaaaactacagtttctaaataactccataa 303  Q
    ||||||||||||||||||||| ||| ||||||| || ||||||||||||||||||||||||||||||| |||| |||||    
T  18082688 atggagtatagaactctggaattagacacatgttcatctgccacacatacaaaactacagtttctaaacaacttcataa 18082610  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 83
Target Start/End: Complemental strand, 18107143 - 18107108
Alignment:
Q  48 aagctgaactatgtatgctgaggaatataaaatcag 83  Q
    |||||||||||||||||||| |||||||||||||||    
T  18107143 aagctgaactatgtatgctggggaatataaaatcag 18107108  T

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Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 71 - 209
Target Start/End: Complemental strand, 37876388 - 37876249
Alignment:
Q  71 aatataaaatcagacat-cataaagcttcccttttatgcgcataacacctatatcataaagcttaatagttaaactgagcaatatgaagacccccatata 169  Q
    ||||||||||||| ||| |||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||  |||||||||||||||||| ||     
T  37876388 aatataaaatcaggcattcataaaacttcccttttatgcgcataacaactatatcataaagctaaatagttaaactatgcaatatgaagacccccacatg 37876289  T
Q  170 gaaaaggtataatgccggtgtgcaaaggaacacacagacc 209  Q
    || |||||||||||||||| ||||||||||||||||||||    
T  37876288 gagaaggtataatgccggtttgcaaaggaacacacagacc 37876249  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 225 - 275
Target Start/End: Complemental strand, 37875787 - 37875737
Alignment:
Q  225 atggagtatagaactctggaactagtcacatgtgcagctgccacacataca 275  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  37875787 atggagtatacaactctggaactagtcacatgtgcagctgccacacataca 37875737  T

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Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 71 - 209
Target Start/End: Original strand, 23895293 - 23895432
Alignment:
Q  71 aatataaaatcagacat-cataaagcttcccttttatgcgcataacacctatatcataaagcttaatagttaaactgagcaatatgaagacccccatata 169  Q
    ||||||||||||| ||| |||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||  |||||||||||||||||| ||     
T  23895293 aatataaaatcaggcattcataaaacttcccttttatgcgcataacaactatatcataaagctaaatagttaaactatgcaatatgaagacccccacatg 23895392  T
Q  170 gaaaaggtataatgccggtgtgcaaaggaacacacagacc 209  Q
    || |||||||||||||||| ||||||||||||||||||||    
T  23895393 gagaaggtataatgccggtttgcaaaggaacacacagacc 23895432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 23895894 - 23895947
Alignment:
Q  225 atggagtatagaactctggaactagtcacatgtgcagctgccacacatacaaaa 278  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| |||    
T  23895894 atggagtatacaactctggaactagtcacatgtgcagctgccacacatacnaaa 23895947  T

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