View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9357_low_2 (Length: 621)
Name: NF9357_low_2
Description: NF9357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9357_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-147; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 288 - 605
Target Start/End: Original strand, 52822713 - 52823025
Alignment:
| Q |
288 |
gcagtttgtaatactgaataacccaaatatgcttcatatatttgctacaggtccacgtgtccgttaggtacgatacagatcgtcatgataatctctaaaa |
387 |
Q |
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| T |
52822713 |
gcagtttgtaatactgaataacccaaatatgcttcatatatttgccacaggtccacgtgtccgttaggtacgatacagatcgtcatgataatctctaaaa |
52822812 |
T |
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| Q |
388 |
ccaatagtatagtagtatattgcaaaatcatcatttattttatttattccactcccaggaaatacgtataatagcctatagccctatacag--gaaggaa |
485 |
Q |
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| T |
52822813 |
ccaatagtatagtagtatattgcaaaatcatcatttattttatttattccactcccaggaaatacgtataatag--------cctatacaggagaaggaa |
52822904 |
T |
|
| Q |
486 |
gtgtacaagttcatttccactttagtt-cacctgctattactttcactttttctttctgaattttcttagccatgtgatttctcaataatgatattaaca |
584 |
Q |
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| T |
52822905 |
gtgtacaagttcatttccactttagttccacctgctattactttcactttttctttttgaattttcttagccatgtgatttctcaataatgatattaaca |
52823004 |
T |
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| Q |
585 |
cgtgattgttgtcaacacatg |
605 |
Q |
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| T |
52823005 |
cgtgattgttgtcaacacatg |
52823025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 52822426 - 52822626
Alignment:
| Q |
1 |
tagttaccgtaacttcctattcttttatcccttctggctgagttgcctatcttgacttgtgtcgattcataaagtagtaactccaaaatgctttactttc |
100 |
Q |
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| T |
52822426 |
tagttaccgtaacttcctattcttttatcccttctggctgagttgcctatcttgacttgtgtcg----ataaagtagtaactccaaaattctttactttc |
52822521 |
T |
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| Q |
101 |
cttttcttttcttttctatttattagagaggga----aaggaagtaagtgaatcactgattcattatttttgttcgagtccttaatgggtggcagctatt |
196 |
Q |
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| T |
52822522 |
cttttcttttcttttctatttagcagagagggaaagtaagtaagtaagtgaatcactgattcattatttttgttcaagtccttaatgggtggcagctatt |
52822621 |
T |
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| Q |
197 |
acaag |
201 |
Q |
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| T |
52822622 |
acaag |
52822626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 288 - 378
Target Start/End: Complemental strand, 31339420 - 31339330
Alignment:
| Q |
288 |
gcagtttgtaatactgaataacccaaatatgcttcatatatttgctacaggtccacgtgtccgttaggtacgatacagatcgtcatgataa |
378 |
Q |
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| T |
31339420 |
gcagtttgtaatacagaataacccaaatatgcctcatatatttgctacaggtccacgtgttcgttaggtatgatacagatcgtcatgataa |
31339330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 292 - 378
Target Start/End: Complemental strand, 31332686 - 31332600
Alignment:
| Q |
292 |
tttgtaatactgaataacccaaatatgcttcatatatttgctacaggtccacgtgtccgttaggtacgatacagatcgtcatgataa |
378 |
Q |
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| T |
31332686 |
tttgtaatacagaataacccaaatatgcctcatatatttgctacaggtccacgtgttcgttaggtatgatacagatcgtcatgataa |
31332600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 8e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 292 - 378
Target Start/End: Complemental strand, 7405083 - 7404997
Alignment:
| Q |
292 |
tttgtaatactgaataacccaaatatgcttcatatatttgctacaggtccacgtgtccgttaggtacgatacagatcgtcatgataa |
378 |
Q |
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| T |
7405083 |
tttgtaatacagaataacccaaatatgcctcatatatttgctacaggtccacgtgttcgttaggtatgatacagatcgtcatgataa |
7404997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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