View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9357_low_21 (Length: 389)
Name: NF9357_low_21
Description: NF9357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9357_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 19 - 372
Target Start/End: Original strand, 1153831 - 1154184
Alignment:
| Q |
19 |
aaaatctactttcagaagggctatcatcagcacagtttattggcccccgagacaaaagagaaaacaaactaaggaatgaaagaacgccaacatatatcta |
118 |
Q |
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| T |
1153831 |
aaaatctactttcagaagggctatcatcagcacggtttattggcccccgagacaaaagagaaaacaaactaaggaatgaaagaacaccaacatatatcta |
1153930 |
T |
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| Q |
119 |
tctacattctacaccacaaattcagtttattacacacagtactctacaagcagtagagtttcatcatctcctgtcagttccactactctgaggaagcatc |
218 |
Q |
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| T |
1153931 |
tctacattctacaccacaaattcagtttattacacacagtactctacaagcagtagagtttcatcatctcctgtcagttccactactctgaggaagcatc |
1154030 |
T |
|
| Q |
219 |
ggtactctggtcaccactcttagcctttcccagcacaataccaagctgcacaaaacagtaccaaataattaattacttgttactagcaaattgaacacaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1154031 |
agtactctggtcaccactcttagcctttcccagcacaataccaagctgcacaaaacagtaccagataattaattacttgttactagcaaattgaacacaa |
1154130 |
T |
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| Q |
319 |
ttaagtgataatccagaaatcaggaaaatgtaagaagaagaaccttagcctttg |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1154131 |
ttaagtgataatccagaaatcaggaaaatgtaagaagaagaaccttagcctttg |
1154184 |
T |
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