View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9357_low_25 (Length: 371)
Name: NF9357_low_25
Description: NF9357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9357_low_25 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 5 - 354
Target Start/End: Complemental strand, 8032447 - 8032096
Alignment:
| Q |
5 |
tttggtgttatacttaagtgta-gagaacaacccaccaacgctaaagactagtcaattaggttgaagagtctcatgactttcattatattggtattgagc |
103 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
8032447 |
tttggtgttatacttaagtgtatgagaacaacccaccaacactaaagactagtcaattaggttgaagagtctcatgactttcattatatcagtattgagc |
8032348 |
T |
|
| Q |
104 |
cgaagatagctcttcgttttttatctaacaatgactgtcactataatgacatcgaaccaatgattgtccttttgcttttgatgtcttcacttatgtatca |
203 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| | ||||| |||||||||| |
|
|
| T |
8032347 |
cgaagatagctcttcaatttttatctaacaatgactttcactataatgacatcgaaccagtgattgtccttttgcttttgacgccttcaattatgtatca |
8032248 |
T |
|
| Q |
204 |
gtattcaatcgtgaaccttaatcgagtagttctcgtgg-cccactctcaaataaaacatcaattgttaggatataacaactcataagactaatcaattat |
302 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8032247 |
gtattcaatcgcgaaccttaatcgagtaattctcgtggccccactctcaaataaaacatcaattgttaggatataacaactcataagactaatcaattat |
8032148 |
T |
|
| Q |
303 |
gtgggtgcgactcgtgacttaactctgaaattgaatattttatctgttcaat |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
8032147 |
gtgggtgcgactcgtgacttaactctgaaattgaatattttatccgttcaat |
8032096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University