View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9357_low_27 (Length: 365)
Name: NF9357_low_27
Description: NF9357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9357_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 19 - 348
Target Start/End: Complemental strand, 44005264 - 44004935
Alignment:
| Q |
19 |
aacttggagcaagtcctgcagtatatgaactagacaatgatacatatggtagagaaatggaatgggctttgaggggtaattttggatgtaacccttcagt |
118 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44005264 |
aacttggagcaagtcctgcagtatatgaactagaaaatgatacatatggtagagaaatggaatgggctttgaggggtaattttggatgtaacccttcagt |
44005165 |
T |
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| Q |
119 |
tccagcagtgttcataggtggaaaatttgttggatcttcaaaagatgtgatatctcatcatgttgatggatctctcaaacaaatgcttatggatgcaaag |
218 |
Q |
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|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
44005164 |
tccagcagtgttcataggtggaaaatttgtaggatcctcaaaagatgtgatatctcatcatgttgatggatcactcaaacaaatgcttatggatgcaaag |
44005065 |
T |
|
| Q |
219 |
gccatttggttttagttatagtttcattcagaactctttataactttataccaaaagtggtacgaaggaaggagttctggtaatattttgcagacaaatg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44005064 |
gccatttggttttagttatagtttcattcagaactctttatagctttataccaaaagtggtacgaaggaaggagttctggtaatattttgcagacaaatg |
44004965 |
T |
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| Q |
319 |
ttcaaccaggacacatttggtttttcttgt |
348 |
Q |
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|| || |||||||||||||||||||||||| |
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| T |
44004964 |
tttaaacaggacacatttggtttttcttgt |
44004935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 260
Target Start/End: Complemental strand, 44009190 - 44008949
Alignment:
| Q |
19 |
aacttggagcaagtcctgcagtatatgaactagacaatgatacatatggtagagaaatggaatgggctttgaggggtaattttggatgtaacccttcagt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44009190 |
aacttggagcaagtcctgcagtatatgaactagacaatgatacatatggtagagaaatggaatgggctttgaggggtaattttggatgtaacccttcagt |
44009091 |
T |
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| Q |
119 |
tccagcagtgttcataggtggaaaatttgttggatcttcaaaagatgtgatatctcatcatgttgatggatctctcaaacaaatgcttatggatgcaaag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44009090 |
tccagcagtgttcataggtggaaaatttgttggatcttcaaaagatgtgatatctcatcatgttgatggatctctcaaacaaatgcttatggatgcaaag |
44008991 |
T |
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| Q |
219 |
gccatttggttttagttatagtttcattcagaactctttata |
260 |
Q |
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|||||||||||||||| ||| || |||||||||||||||||| |
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| T |
44008990 |
gccatttggttttagtcatatttccattcagaactctttata |
44008949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 24 - 234
Target Start/End: Original strand, 39846731 - 39846938
Alignment:
| Q |
24 |
ggagcaagtcctgcagtatatgaactagacaatgatacatatggtagagaaatggaatgggctttgaggggtaattttggatgtaacccttcagttccag |
123 |
Q |
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|||||||||||||| || |||| || |||||||| | |||||||| ||||||||| ||||||||||| || ||||||||||||||||||| |||| |
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| T |
39846731 |
ggagcaagtcctgctgtgcatgagcttgacaatgaaccctatggtagggaaatggaaagggctttgaggagtc---ttggatgtaacccttcagtgccag |
39846827 |
T |
|
| Q |
124 |
cagtgttcataggtggaaaatttgttggatcttcaaaagatgtgatatctcatcatgttgatggatctctcaaacaaatgcttatggatgcaaaggccat |
223 |
Q |
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|||||||||| |||||||||||||| || || ||||| ||||||||||||| ||||||||||||||| |||||||||||||| |||| ||| | ||||| |
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| T |
39846828 |
cagtgttcattggtggaaaatttgtagggtcatcaaaggatgtgatatctcttcatgttgatggatcactcaaacaaatgctcatggctgctagagccat |
39846927 |
T |
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| Q |
224 |
ttggttttagt |
234 |
Q |
| |
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|||||| |||| |
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| T |
39846928 |
ttggttctagt |
39846938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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