View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9357_low_30 (Length: 359)

Name: NF9357_low_30
Description: NF9357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9357_low_30
NF9357_low_30
[»] scaffold0392 (1 HSPs)
scaffold0392 (18-344)||(1795-2120)
[»] chr4 (5 HSPs)
chr4 (46-86)||(8472547-8472587)
chr4 (157-231)||(49457099-49457173)
chr4 (40-85)||(13722786-13722831)
chr4 (40-83)||(13748508-13748551)
chr4 (46-86)||(9504581-9504621)
[»] chr8 (3 HSPs)
chr8 (36-87)||(36272207-36272258)
chr8 (45-85)||(3643720-3643760)
chr8 (42-86)||(5413950-5413994)
[»] chr6 (1 HSPs)
chr6 (39-76)||(13375269-13375306)
[»] chr5 (1 HSPs)
chr5 (43-87)||(10214050-10214094)
[»] chr2 (6 HSPs)
chr2 (43-87)||(6774723-6774767)
chr2 (35-87)||(10734580-10734632)
chr2 (43-87)||(14408734-14408778)
chr2 (39-85)||(29509814-29509860)
chr2 (39-87)||(15992716-15992763)
chr2 (39-87)||(36322716-36322763)
[»] scaffold0045 (1 HSPs)
scaffold0045 (40-87)||(55987-56033)
[»] chr7 (1 HSPs)
chr7 (39-86)||(39887648-39887694)
[»] chr3 (1 HSPs)
chr3 (48-86)||(38692789-38692827)
[»] chr1 (4 HSPs)
chr1 (37-87)||(34404163-34404212)
chr1 (44-85)||(596325-596366)
chr1 (49-81)||(9541969-9542001)
chr1 (54-86)||(27728190-27728222)


Alignment Details
Target: scaffold0392 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: scaffold0392
Description:

Target: scaffold0392; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 18 - 344
Target Start/End: Complemental strand, 2120 - 1795
Alignment:
Q  18 tttggtacaatcaaagtatgtcaccgtgattttcgcaaaagctacactttgtagcttcaacaaaatcacgtatggtatgtcctcaaactcacggtgactc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2120 tttggtacaatcaaagtatgtcaccgtgattttcgcaaaagctacactttgtagcttcaacaaaatcacgtatggtatgtcctcaaactcacggtgactc 2021  T
Q  118 caaacatgcactaggatattgatgtcaaaatacgcaccgtgtgaaagaaccgctgagaaaaacactacttccaccataaggccaaacaaaccgcatggga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2020 caaacatgcactaggatattgatgtcaaaatacgcaccgtgtgaaagaaccgctgagaaaaacactacttccaccataaggccaaacaaaccgcatggga 1921  T
Q  218 atcagcacagtccccactacactacccacatcccttacatgatccatgatctgactaaaaaattccacctccaattcaatatgctactacactcgcaata 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  1920 atcagcacagtccccactacactacccacatcccttacatgatccatgatctgacta-aaaattccacctccaattcaatatgctactacactcacaata 1822  T
Q  318 ccttccaatcaccacacttcatcacag 344  Q
    |||||||||||||||||||||||||||    
T  1821 ccttccaatcaccacacttcatcacag 1795  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 8472547 - 8472587
Alignment:
Q  46 attttcgcaaaagctacactttgtagcttcaacaaaatcac 86  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  8472547 attttggcaaaagctacactttgtagcttcaacaaaatcac 8472587  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 231
Target Start/End: Original strand, 49457099 - 49457173
Alignment:
Q  157 tgtgaaagaaccgctgagaaaaacactacttccaccataaggccaaacaaaccgcatgggaatcagcacagtccc 231  Q
    |||||||||||| |||||| ||||| | ||||| ||||| ||||| ||||||||||  ||||||||||| |||||    
T  49457099 tgtgaaagaaccactgagataaacagttcttcccccatatggccacacaaaccgcactggaatcagcaccgtccc 49457173  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 85
Target Start/End: Complemental strand, 13722831 - 13722786
Alignment:
Q  40 accgtgattttcgcaaaagctacactttgtagcttcaacaaaatca 85  Q
    ||||||||||| |||||| | |||||||||||||||||||||||||    
T  13722831 accgtgattttggcaaaaaccacactttgtagcttcaacaaaatca 13722786  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 83
Target Start/End: Complemental strand, 13748551 - 13748508
Alignment:
Q  40 accgtgattttcgcaaaagctacactttgtagcttcaacaaaat 83  Q
    ||||||||||| |||||| | |||||||||||||||||||||||    
T  13748551 accgtgattttggcaaaaaccacactttgtagcttcaacaaaat 13748508  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 9504621 - 9504581
Alignment:
Q  46 attttcgcaaaagctacactttgtagcttcaacaaaatcac 86  Q
    ||||| |||||||||| |||||| |||||||||||||||||    
T  9504621 attttggcaaaagctagactttggagcttcaacaaaatcac 9504581  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 36272258 - 36272207
Alignment:
Q  36 tgtcaccgtgattttcgcaaaagctacactttgtagcttcaacaaaatcacg 87  Q
    ||||||||||||| | ||||||||||| ||||| ||||||||||||||||||    
T  36272258 tgtcaccgtgattatggcaaaagctacgctttgaagcttcaacaaaatcacg 36272207  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 3643720 - 3643760
Alignment:
Q  45 gattttcgcaaaagctacactttgtagcttcaacaaaatca 85  Q
    |||||| |||||||||||||||||||||||||| |||||||    
T  3643720 gatttttgcaaaagctacactttgtagcttcaataaaatca 3643760  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 5413994 - 5413950
Alignment:
Q  42 cgtgattttcgcaaaagctacactttgtagcttcaacaaaatcac 86  Q
    |||||||||  |||||||||||||||| |||||||||||| ||||    
T  5413994 cgtgattttgacaaaagctacactttggagcttcaacaaactcac 5413950  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 76
Target Start/End: Original strand, 13375269 - 13375306
Alignment:
Q  39 caccgtgattttcgcaaaagctacactttgtagcttca 76  Q
    |||||||||||| |||||||||||||||||||||||||    
T  13375269 caccgtgattttggcaaaagctacactttgtagcttca 13375306  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 10214094 - 10214050
Alignment:
Q  43 gtgattttcgcaaaagctacactttgtagcttcaacaaaatcacg 87  Q
    |||||||| ||||||||||||||||||||| ||||||| ||||||    
T  10214094 gtgattttggcaaaagctacactttgtagcatcaacaacatcacg 10214050  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 6774767 - 6774723
Alignment:
Q  43 gtgattttcgcaaaagctacactttgtagcttcaacaaaatcacg 87  Q
    |||||||| ||||||||||||||| | ||||||||||||||||||    
T  6774767 gtgattttagcaaaagctacacttcggagcttcaacaaaatcacg 6774723  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 10734632 - 10734580
Alignment:
Q  35 atgtcaccgtgattttcgcaaaagctacactttgtagcttcaacaaaatcacg 87  Q
    ||||| |||||| |||||||||| || ||||||| ||||||||||||||||||    
T  10734632 atgtctccgtgactttcgcaaaaactgcactttggagcttcaacaaaatcacg 10734580  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 14408734 - 14408778
Alignment:
Q  43 gtgattttcgcaaaagctacactttgtagcttcaacaaaatcacg 87  Q
    |||||||| | ||||||||||||||| ||||||||||||||||||    
T  14408734 gtgattttagaaaaagctacactttggagcttcaacaaaatcacg 14408778  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 85
Target Start/End: Original strand, 29509814 - 29509860
Alignment:
Q  39 caccgtgattttcgcaaaagctacactttgtagcttcaacaaaatca 85  Q
    ||||||||||||  |||||||||||||||  ||||||||||||||||    
T  29509814 caccgtgattttaacaaaagctacactttcgagcttcaacaaaatca 29509860  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 15992716 - 15992763
Alignment:
Q  39 caccgtgattttcgcaaaagctacactttgtagcttcaacaaaatcacg 87  Q
    ||||||||||||  |||||||||||| |||||||||||| |||||||||    
T  15992716 caccgtgattttgacaaaagctacac-ttgtagcttcaataaaatcacg 15992763  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 36322716 - 36322763
Alignment:
Q  39 caccgtgattttcgcaaaagctacactttgtagcttcaacaaaatcacg 87  Q
    ||||||||||||  ||||| ||||||||||||||||| |||||||||||    
T  36322716 caccgtgattttt-caaaaactacactttgtagcttctacaaaatcacg 36322763  T

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Target: scaffold0045 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 87
Target Start/End: Complemental strand, 56033 - 55987
Alignment:
Q  40 accgtgattttcgcaaaagctacactttgtagcttcaacaaaatcacg 87  Q
    ||||||||||| |||||| | |||||||||||||||||||||||||||    
T  56033 accgtgatttt-gcaaaaaccacactttgtagcttcaacaaaatcacg 55987  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 86
Target Start/End: Original strand, 39887648 - 39887694
Alignment:
Q  39 caccgtgattttcgcaaaagctacactttgtagcttcaacaaaatcac 86  Q
    ||||||||||||| |||||||||||||||||||||||  |||||||||    
T  39887648 caccgtgattttc-caaaagctacactttgtagcttctgcaaaatcac 39887694  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 86
Target Start/End: Original strand, 38692789 - 38692827
Alignment:
Q  48 tttcgcaaaagctacactttgtagcttcaacaaaatcac 86  Q
    |||||||||| |||||||||| |||||||||||||||||    
T  38692789 tttcgcaaaaactacactttggagcttcaacaaaatcac 38692827  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 34404212 - 34404163
Alignment:
Q  37 gtcaccgtgattttcgcaaaagctacactttgtagcttcaacaaaatcacg 87  Q
    |||||||| ||||| ||||||||||||||| ||||||||||||||| ||||    
T  34404212 gtcaccgtaatttt-gcaaaagctacacttcgtagcttcaacaaaagcacg 34404163  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 596325 - 596366
Alignment:
Q  44 tgattttcgcaaaagctacactttgtagcttcaacaaaatca 85  Q
    ||||||| |||||||||||||||||| ||||| |||||||||    
T  596325 tgattttggcaaaagctacactttgtggcttcgacaaaatca 596366  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 9542001 - 9541969
Alignment:
Q  49 ttcgcaaaagctacactttgtagcttcaacaaa 81  Q
    ||||||||||||||||||||||| |||||||||    
T  9542001 ttcgcaaaagctacactttgtaggttcaacaaa 9541969  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 86
Target Start/End: Original strand, 27728190 - 27728222
Alignment:
Q  54 aaaagctacactttgtagcttcaacaaaatcac 86  Q
    ||||||||||||||| |||||||||||||||||    
T  27728190 aaaagctacactttggagcttcaacaaaatcac 27728222  T

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