View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9357_low_31 (Length: 356)
Name: NF9357_low_31
Description: NF9357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9357_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 17 - 346
Target Start/End: Original strand, 19272249 - 19272577
Alignment:
| Q |
17 |
cataaactacatatgttgatgggttttatgcaataaaagaggatacaaata-tttctgacgatacaattagaactgtcaaaatggtccattgagatggac |
115 |
Q |
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| T |
19272249 |
cataaactatatatgttgatggattttatgcaacaaaag--gatacaaatgctttctgatgatgcaactagaactgtcaaaatggtccattaagatggac |
19272346 |
T |
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| Q |
116 |
aaaaaagtccaatacac------tttaaaaacactatcaagttcgaccttatgcgaaactaatccaccatataatttttnnnnnnnnnnnnnnnntttga |
209 |
Q |
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| T |
19272347 |
aaaaaagtccaatacacatgaactttaaaaacactatcaaattcgaccttatgcgaaactaatccaccatataatttttaaaaataaaataaaa-tttga |
19272445 |
T |
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| Q |
210 |
acaatactgtcaaatagtccaacaaaatttcttattacattaccaataatccaatccaatataacataaattgttcaaagcaatgcattatccaaacatt |
309 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19272446 |
acattactgtcaaatagtccaacaaaatttcttattacattaccaataatc-----caatataacataaattgttcaaagcaatgcattatccaaacatt |
19272540 |
T |
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| Q |
310 |
ttacaaactaagttaaagtttttcaaaacaagtataa |
346 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
19272541 |
ttacaaactaagttaaagtttttcaaaacaagtataa |
19272577 |
T |
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