View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9357_low_33 (Length: 354)
Name: NF9357_low_33
Description: NF9357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9357_low_33 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 8 - 354
Target Start/End: Complemental strand, 39776204 - 39775858
Alignment:
| Q |
8 |
atcatagagaagaacttacaaaaatttagttatagagcaatgcatgtccaaatctttggaatatttagatagaaatttggggtgtgattaagttaagagt |
107 |
Q |
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| T |
39776204 |
atcatagagaagaacttacaaaaatttagttatagagcaatgcatgtccaaatctttggaatattaagatagaaatttggggtgtgattaagttaagagt |
39776105 |
T |
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| Q |
108 |
ccacacttaattacactatgcagttcaagggttctaagttctaaccttgccaaggcctcagggtcccatgatgatggcacagcttctttgacatgatcat |
207 |
Q |
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| T |
39776104 |
ccacacttaattacactatgcagttcaagggttctaagttctaaccttgccaaggcctcagggtcccatgatgatggcacagcttctttgacatgatcat |
39776005 |
T |
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| Q |
208 |
ggagttcaccatgatagttttctaattctacagcatagcgtttgatgaaccaaccatcataagcgagagacttaatagaagccaagtctttgatacatcg |
307 |
Q |
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| T |
39776004 |
ggagttcaccatgatagttttctaattctacagcatagcgtttgatgaaccaaccatcataagcgagagacttaatagaagccaagtctttgatacatcg |
39775905 |
T |
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| Q |
308 |
accagataacccaaatgaagcacagaaatgaccagatgcagtgtctc |
354 |
Q |
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| T |
39775904 |
accagataacccaaatgaagcacaaaaatgaccagatgcagtgtctc |
39775858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 147 - 271
Target Start/End: Complemental strand, 39782362 - 39782238
Alignment:
| Q |
147 |
tctaaccttgccaaggcctcagggtcccatgatgatggcacagcttctttgacatgatcatggagttcaccatgatagttttctaattctacagcatagc |
246 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| || | ||||| |
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| T |
39782362 |
tctaaccttgccactgcctcagggtcccatgatgatggcacagcttctttgacatgatcatagagttcaccatgatacttttctaattcaacggtatagc |
39782263 |
T |
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| Q |
247 |
gtttgatgaaccaaccatcataagc |
271 |
Q |
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| T |
39782262 |
gtttgatgaaccatccatcataagc |
39782238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 148 - 271
Target Start/End: Complemental strand, 39793836 - 39793713
Alignment:
| Q |
148 |
ctaaccttgccaaggcctcagggtcccatgatgatggcacagcttctttgacatgatcatggagttcaccatgatagttttctaattctacagcatagcg |
247 |
Q |
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||||||||| ||||||| ||| ||||||| ||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||| |
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| T |
39793836 |
ctaaccttgtcaaggccccagcgtcccataatgatggcacaacttctttgacatgatcatggagttgaccatgatacttttctaattcaacagcatagcg |
39793737 |
T |
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| Q |
248 |
tttgatgaaccaaccatcataagc |
271 |
Q |
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| T |
39793736 |
tttgatgaaccaaccatcataagc |
39793713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 147 - 271
Target Start/End: Complemental strand, 39788819 - 39788695
Alignment:
| Q |
147 |
tctaaccttgccaaggcctcagggtcccatgatgatggcacagcttctttgacatgatcatggagttcaccatgatagttttctaattctacagcatagc |
246 |
Q |
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|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| || | ||||| |
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| T |
39788819 |
tctaaccttgccaaagcttcagggtcccatgatgatggcacagcttctttgacatgatcgtggagttcaccatgatatctttctaattcaacggtatagc |
39788720 |
T |
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| Q |
247 |
gtttgatgaaccaaccatcataagc |
271 |
Q |
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| T |
39788719 |
gtttgatgaaccagccatcataagc |
39788695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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