View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9357_low_35 (Length: 347)
Name: NF9357_low_35
Description: NF9357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9357_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 46680972 - 46681310
Alignment:
| Q |
1 |
ataagcattgagtacaaatttgtttatcaaaaaattaaactacacgccttaaaatattaaaataattctcaatgtgattaaagtaacttaaaatcatcaa |
100 |
Q |
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| T |
46680972 |
ataagcattgagtacaaatttgtttatcaaaaaattaaactacacgccttaaaatattaaaataattctcgatctgattaaagtaacttaaaatcatcaa |
46681071 |
T |
|
| Q |
101 |
taataatagacttcaaactaatatttgcattaaaattcacctttcaatataaatagtcatgctatcatttagaaaccaacctccctttcaacatggtgtt |
200 |
Q |
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|| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
46681072 |
ta---atagacttaaaactaatatttgcactaaaattcacctttcaatataaatagtcatgctatcatttagaaaccaacctccctttcaatatggtgtt |
46681168 |
T |
|
| Q |
201 |
atgctattacatatagtttcatgctgctaccttttctttactttcctgctaatacttatagtttgaaattcatacattcaaaagggttccctgcttcatc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46681169 |
atgctattacatatagtttcatgctgctaccttttctttactttcctgctaatacgtatagtttgaaattcatacattcaaaagggttccctgcttcatc |
46681268 |
T |
|
| Q |
301 |
taatctaatttaatattttctcaaatcaaactacctccaaac |
342 |
Q |
| |
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| T |
46681269 |
taatctaatttaatattttctcaaatcaaactacctccaaac |
46681310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 208 - 342
Target Start/End: Original strand, 46696389 - 46696523
Alignment:
| Q |
208 |
tacatatagtttcatgctgctaccttttctttactttcctgctaatacttatagtttgaaattcatacattcaaaagggttccctgcttcatctaatcta |
307 |
Q |
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| T |
46696389 |
tacatatagtttcatgctgctaccttttctttactttcctgctactaagtatagtttgaaattcatacattcagaagggttccccgcttcatctaatcta |
46696488 |
T |
|
| Q |
308 |
atttaatattttctcaaatcaaactacctccaaac |
342 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
46696489 |
atttaatattttctcaaatcaaactacctccaaac |
46696523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 145 - 207
Target Start/End: Original strand, 46696295 - 46696357
Alignment:
| Q |
145 |
caatataaatagtcatgctatcatttagaaaccaacctccctttcaacatggtgttatgctat |
207 |
Q |
| |
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| T |
46696295 |
caatataaattgtcacgctatcatttagaaaccaacctccctttcaatatggtgttatgctat |
46696357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 20256380 - 20256457
Alignment:
| Q |
26 |
atcaaaaaattaaactacacgccttaaaatattaaaataattctcaatgtgattaaagtaacttaaaatcatcaataa |
103 |
Q |
| |
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||||||||||||||||||| |||||||| |||||||||||| | | | ||| || |||||||||||||||||||| |
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| T |
20256380 |
atcaaaaaattaaactacataccttaaaaaattaaaataattatttacgcgatctaactaacttaaaatcatcaataa |
20256457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 177
Target Start/End: Original strand, 15667110 - 15667255
Alignment:
| Q |
26 |
atcaaaaaattaaactacacgccttaaaatattaaaataattctcaatgtgattaaagtaacttaaaatcatcaataataatagacttcaaactaatatt |
125 |
Q |
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||||||||| ||||||||| |||||||| |||||||||| | | ||| ||| || |||||| ||||||||||||||| ||| |||||||| | |
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| T |
15667110 |
atcaaaaaagtaaactacataccttaaaaaattaaaataagtttttatgcgatccaactaacttgaaatcatcaataata----actcagaactaatact |
15667205 |
T |
|
| Q |
126 |
tgcattaaaattcacctttcaatataaatagtcatgctatcatttagaaacc |
177 |
Q |
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|||| | |||| |||||| ||||||| |||||||||||||||||||||| |
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| T |
15667206 |
tgcact--aatttccctttcgatataaaccgtcatgctatcatttagaaacc |
15667255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 30703988 - 30703938
Alignment:
| Q |
29 |
aaaaaattaaactacacgccttaaaatattaaaataattctcaatgtgatt |
79 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||| |||||||||||| |
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| T |
30703988 |
aaaaaattaaactacacatgttaaaaaattaaaataatactcaatgtgatt |
30703938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 601950 - 601902
Alignment:
| Q |
31 |
aaaattaaactacacgccttaaaatattaaaataattctcaatgtgatt |
79 |
Q |
| |
|
||||||||| |||||||| ||||| |||||||||||||||||| |||| |
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| T |
601950 |
aaaattaaaatacacgccctaaaaatttaaaataattctcaatgcgatt |
601902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 177
Target Start/End: Complemental strand, 28313390 - 28313354
Alignment:
| Q |
141 |
ctttcaatataaatagtcatgctatcatttagaaacc |
177 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |
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|
| T |
28313390 |
ctttcaatataaaccgtcatgctatcatttagaaacc |
28313354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 3708217 - 3708172
Alignment:
| Q |
60 |
aaataattctcaatgtgattaaagtaacttaaaatcatcaataata |
105 |
Q |
| |
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||||||||| |||||||||| |||||||||| ||||||||||||| |
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| T |
3708217 |
aaataattcacaatgtgattttagtaacttaatatcatcaataata |
3708172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 177
Target Start/End: Original strand, 12055156 - 12055193
Alignment:
| Q |
140 |
cctttcaatataaatagtcatgctatcatttagaaacc |
177 |
Q |
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|||||||||||||| |||||||||||||||||||||| |
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| T |
12055156 |
cctttcaatataaaccgtcatgctatcatttagaaacc |
12055193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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