View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9357_low_37 (Length: 347)
Name: NF9357_low_37
Description: NF9357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9357_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 199 - 329
Target Start/End: Original strand, 21835829 - 21835959
Alignment:
| Q |
199 |
tgttggattaatgtgtagttttccaaaaggatttgttgagtggcaaattttattaacctcattgttactgtttaatctgatttctgaggtcacctatggt |
298 |
Q |
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| T |
21835829 |
tgttggattaatgtgtagttttccaaaatcatatgttgattggcaaatcttattaacctcattgttactctttattctaattgctgaggttacctatgct |
21835928 |
T |
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| Q |
299 |
ttatttgctaatgaatttgatgaaatgtatc |
329 |
Q |
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| T |
21835929 |
ttgtttgctaacgaatgtgatgaattgtatc |
21835959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 127
Target Start/End: Original strand, 21835696 - 21835743
Alignment:
| Q |
80 |
tggttgcagttcaaagaaattttcgcaggtttggaattgaagaaatag |
127 |
Q |
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| T |
21835696 |
tggttgcagttcaaagaaatttaagcaagtttggaattaaagaaatag |
21835743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 9e-21; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 248 - 315
Target Start/End: Complemental strand, 392352 - 392285
Alignment:
| Q |
248 |
ttattaacctcattgttactgtttaatctgatttctgaggtcacctatggtttatttgctaatgaatt |
315 |
Q |
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| T |
392352 |
ttattaacctcattgttactgttcaatctgatttctgaggtcacctttgctttatttgctaataaatt |
392285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 48 - 94
Target Start/End: Original strand, 10580453 - 10580499
Alignment:
| Q |
48 |
atgcctacaggttactggagatccaatgaaggtggttgcagttcaaa |
94 |
Q |
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| T |
10580453 |
atgcctacaggttactggagatccaatgaaggtggttgcagttcaaa |
10580499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 169 - 273
Target Start/End: Complemental strand, 6414440 - 6414336
Alignment:
| Q |
169 |
gttataattgttggtgcaagaagtttgttttgttggattaatgtgtagttttccaaaaggatttgttgagtggcaaattttattaacctcattgttactg |
268 |
Q |
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| T |
6414440 |
gttataattttttgcgcaaaaagtttattctgtcgtattaatgtgtagttttccaaaatgatttgttgaccggaaaactttattaacctaattgttactg |
6414341 |
T |
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| Q |
269 |
tttaa |
273 |
Q |
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|||| |
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| T |
6414340 |
attaa |
6414336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 182
Target Start/End: Complemental strand, 392425 - 392382
Alignment:
| Q |
139 |
aactgagtgcctaagaatttcctttatttcgttataattgttgg |
182 |
Q |
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| T |
392425 |
aactgagtgcctaagaatttcctttattttgttattattgttgg |
392382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 235
Target Start/End: Complemental strand, 392388 - 392351
Alignment:
| Q |
198 |
ttgttggattaatgtgtagttttccaaaaggatttgtt |
235 |
Q |
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| T |
392388 |
ttgttggaatgatgtgtagttttccaaaaggatttgtt |
392351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 327
Target Start/End: Original strand, 6590575 - 6590612
Alignment:
| Q |
290 |
acctatggtttatttgctaatgaatttgatgaaatgta |
327 |
Q |
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| T |
6590575 |
acctatgtttaatttgctaatgaatttgatgaaatgta |
6590612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 127
Target Start/End: Original strand, 36768788 - 36768862
Alignment:
| Q |
53 |
tacaggttactggagatccaatgaaggtggttgcagttcaaagaaattttcgcaggtttggaattgaagaaatag |
127 |
Q |
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| T |
36768788 |
tacaggttactggagacccagggaagatggttgcagtccagagaaatttcggcaagtttggaattaaagaaatag |
36768862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 324
Target Start/End: Original strand, 37046524 - 37046587
Alignment:
| Q |
260 |
ttgttactgtttaatctgatttctgaggtcacctatggtttatttgctaatgaatttgatgaaat |
324 |
Q |
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| T |
37046524 |
ttgttactgtttattctgactgctg-ggttacctatgtttaatttgctaatgaatttgatgaaat |
37046587 |
T |
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