View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9357_low_38 (Length: 346)
Name: NF9357_low_38
Description: NF9357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9357_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 7 - 345
Target Start/End: Original strand, 53618477 - 53618815
Alignment:
| Q |
7 |
cattcttcagtttcatgtgtgttgtcacctcgatatgccagcagtaagcttagcattttcaagcagcaggcatgctttatgctatggtttagtagctttc |
106 |
Q |
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| T |
53618477 |
cattcttcagtttcatgtgtgttgtcacctcgatatgccagcagtaagcttagcattttcaagcagcaggcatgctttatgctatggtttagtagctttc |
53618576 |
T |
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| Q |
107 |
ctagactgttttatgtttcttttaagaagttatgcatactatttcattatttccattctttcattacatcactctagttttaatatattattggcgatac |
206 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
53618577 |
ctagacttttttatgtttcttttaagaagttatgcatactatttcattatttccattctttcattacatcactctagttttaatatattattggtgatac |
53618676 |
T |
|
| Q |
207 |
aggacgaatttgatgctctaaactgagatgctcacatgcataacaagtttttcatgtgaatatctaacatgttttccatgtacaggataatccttttctt |
306 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
53618677 |
aggacgaatttgatgctctaatctgagatgctcacatgcataacaagtttttcatgtgaaaatctaacatgtttcccatgtacaggataatccttttctt |
53618776 |
T |
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| Q |
307 |
tgcattaatattattaaaatatatatcttagaataattt |
345 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
53618777 |
tgcattaatattattaaaatatatatcttagaataattt |
53618815 |
T |
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