View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9357_low_40 (Length: 343)
Name: NF9357_low_40
Description: NF9357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9357_low_40 |
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Alignment Details
Target: chr6 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 44 - 329
Target Start/End: Complemental strand, 16917687 - 16917399
Alignment:
| Q |
44 |
taggaatatgagctatcttataccaatcgtcaccggttctt---ttgagtcgctccacaagcataggacatctatcaatacttagtttctgcaagttttt |
140 |
Q |
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| T |
16917687 |
taggaacatgagctatcttataccaatcttcacctgttcttgagtcgagtcggttctcaagcccaggacatctatcaatacttagtttctgcaagttttc |
16917588 |
T |
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| Q |
141 |
gtgttggtcaaagttgtctggtaactcggttaagataggaaacttactaatttctaattcctgaagagtaggcgtgtttcccaaccagtctggcaaagat |
240 |
Q |
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| T |
16917587 |
gagttgctcaaagttgtctggtagtgaggttaacacaggaaacttactaatttctaatttctgaagagatagcgtgtttcccaaccagtctggcaaagat |
16917488 |
T |
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| Q |
241 |
ctaagagaaggaaaatctgtcagagacaaattttgcagcgacggaatgtgttctaagccgttatataacctgcgccttttatccgcacc |
329 |
Q |
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| T |
16917487 |
ctaagaaaaggaaaatctgtcagagacaaattttccagcgagggaatgtgttctaagccgttatataacctgcgccttttatccgcacc |
16917399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 43 - 339
Target Start/End: Complemental strand, 16912502 - 16912203
Alignment:
| Q |
43 |
ataggaatatgagctatcttataccaatcgtcaccggttctttt---gagtcgctccacaagcataggacatctatcaatacttagtttctgcaagtttt |
139 |
Q |
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||||||| ||||||||||||||||||||| ||||| |||||| | |||||| | ||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
16912502 |
ataggaacatgagctatcttataccaatcttcacctgttcttcttgcgagtcggttcacaagcctaggacatctatcaatacatagtttctgcaagtttt |
16912403 |
T |
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| Q |
140 |
tgtgttggtcaaagttgtctggtaactcggttaagataggaaacttactaatttctaattcctgaagagtaggcgtgtttcccaaccagtctggcaaaga |
239 |
Q |
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| T |
16912402 |
cgagttggtcaaagttgtctggtaacgaggttaacttaggaaacttactaatttctaattcctgaagagatagcgtgtctcccaaccagtctggcaaaga |
16912303 |
T |
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| Q |
240 |
tctaagagaaggaaaatctgtcagagacaaattttgcagcgacggaatgtgttctaagccgttatataacctgcgccttttatccgcacctatgctactc |
339 |
Q |
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| T |
16912302 |
tctaagagaaggaaaatctctcagagacaaattttgcagcaagggaatgtcttctaagccgttatatatcccgcgccttctatccccacccatgatactc |
16912203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 274
Target Start/End: Original strand, 13375982 - 13376036
Alignment:
| Q |
220 |
cccaaccagtctggcaaagatctaagagaaggaaaatctgtcagagacaaatttt |
274 |
Q |
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| T |
13375982 |
cccaaccagtctggcaaggatgttagagaaggaaaattagttagagacaaatttt |
13376036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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