View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9357_low_44 (Length: 338)
Name: NF9357_low_44
Description: NF9357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9357_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 13 - 320
Target Start/End: Complemental strand, 44838491 - 44838185
Alignment:
| Q |
13 |
tttggtgttaattttcttataatacaaaactgatgttcgnnnnnnnnggaaaaggttgtgatagaaagaaaagttttttggttctctagtagaattcata |
112 |
Q |
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| T |
44838491 |
tttggtgttaattttcttataatgcaaaactgatgttcgaaaaaaa-ggaaaaggttgtgatagaaagaaaagttttttggttctctagtagaattcata |
44838393 |
T |
|
| Q |
113 |
cctaattaaagttccctctagctgtcccaatttactgctgttttgtaaatcacactactacacatcactgaggtgacttaaatttctaaaaccagtaggt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
44838392 |
cctaattaaagttccctctagctgtcccaatttactgctgttttgtaaatcacactactacacctcactgaggtgacttaaatttctaaaaccagtaggt |
44838293 |
T |
|
| Q |
213 |
gaaatgcaccctcttgatagacattagctttcttattttcttaatccttaaggtgaacatataataagagtacatttaatcaatagacataaagttcacc |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
44838292 |
gaaatgcaccctcttgatagacattagctttcttattttcttaatccttaaggtgaacatataataaaagtacatttaatcaatagacataaagttcacc |
44838193 |
T |
|
| Q |
313 |
tcttggat |
320 |
Q |
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|||||||| |
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| T |
44838192 |
tcttggat |
44838185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 319
Target Start/End: Complemental strand, 44898586 - 44898460
Alignment:
| Q |
195 |
tttctaaaaccagtaggtgaaatgcaccctcttgatagacattagctttcttattttcttaatccttaa---ggtgaacatataataagagtacatttaa |
291 |
Q |
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||||||||||||||||| ||| | ||| ||||||||||||||||| ||||| |||| |||||| ||| | ||||||||||| ||||||||||||| |
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| T |
44898586 |
tttctaaaaccagtaggc-aaacgttcccccttgatagacattagctatcttagtttcataatccctaataagctgaacatataacaagagtacatttat |
44898488 |
T |
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| Q |
292 |
tcaatagacataaagttcacctcttgga |
319 |
Q |
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|||||| |||||| | |||||||||| |
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| T |
44898487 |
tcaataagtataaagataacctcttgga |
44898460 |
T |
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