View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9357_low_45 (Length: 333)
Name: NF9357_low_45
Description: NF9357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9357_low_45 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 17 - 321
Target Start/End: Complemental strand, 39120822 - 39120518
Alignment:
| Q |
17 |
aggttcaagttcaagaaaaccatgtgatgcatatactctccatagttcaaaaatcacatgttgtgtgtgcttatcacgtggtagcaagaatgcctnnnnn |
116 |
Q |
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| T |
39120822 |
aggttcaagttcaagaaaaccatgtgatgcatatactctccatagttcaaaaatcacatgttgtgtgtgcttatcacgtggtagcaagaatgcctaaaat |
39120723 |
T |
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| Q |
117 |
nnnnnnnnnnnnnnngtcagacatttccttgttggcttaatttggttattccatattatattttgacctcataattcagttaaatacgtattactcaaag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
39120722 |
ggaaaaatgaaaaaagtcagacatttccttgttggcttaatttggttattccatattatattttgacctcataattcagttaaatacttattactcaaag |
39120623 |
T |
|
| Q |
217 |
tttcaaatgaaaactatgttttaaggaataaataaaatatgtttgaaactatgttttttaacagattaaaattggatcacctaatacaatggtttttcag |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39120622 |
tttcaaatgaaaactatgttttaaggaataaataaaatatgtttgaaactatgttttttaacagattaaaattggatcacctaatacaatggtttttcag |
39120523 |
T |
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| Q |
317 |
gtctg |
321 |
Q |
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||||| |
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| T |
39120522 |
gtctg |
39120518 |
T |
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