View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9357_low_46 (Length: 331)
Name: NF9357_low_46
Description: NF9357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9357_low_46 |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 9 - 316
Target Start/End: Original strand, 46764940 - 46765247
Alignment:
| Q |
9 |
tggtgttgacaacgagaaatctcctcagacaatcctcgagcacgagtaagagtcttctcatatattcatctatgattgaagtcatgtttgaaagagttta |
108 |
Q |
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| T |
46764940 |
tggtgttgacaacgagaaatctcctcagacaatcctcgagcacgagtaagagtcttctcatatattcatctatgattgaagtcatgtttgaaagagttta |
46765039 |
T |
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| Q |
109 |
tttgtgctcatctcataatttgactatttatattagtgtttggatacatttataaaaatagtttatttccacaagatccacagaataactaatggttaat |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46765040 |
tttgtgctcatctcataatttgactatttatattagtgtttggatacatttataaaaatagtttatttccacaagatccacagaataactaatggttaat |
46765139 |
T |
|
| Q |
209 |
taagctcatttgaataacatattgaataagcatttaattagaatgcactctgtaacagttaagtttatgattgtcnnnnnnnctcattaagcaaaagctt |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
46765140 |
taagctcatttgaataacatattgaataagcatttaattagaatgcactctgtaacagttaagtttatgattgtctttttttctcattaagcaaaagctt |
46765239 |
T |
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| Q |
309 |
ttgcattt |
316 |
Q |
| |
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|||||||| |
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| T |
46765240 |
ttgcattt |
46765247 |
T |
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