View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9357_low_47 (Length: 330)
Name: NF9357_low_47
Description: NF9357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9357_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 81 - 326
Target Start/End: Original strand, 41983230 - 41983490
Alignment:
| Q |
81 |
ttttgagctcctaggtgagatgtgtaagtatagtggggaagtagttgcatttgaaaattgttgttaaacgtgtgtatttggataacatggtgcccactac |
180 |
Q |
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| T |
41983230 |
ttttgagctcctaggtgagatgtgtaagtatagtggggaagtagttgcatttgaaaattgttgttaaacgtgtgtatttggatgacatggtgcccactac |
41983329 |
T |
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| Q |
181 |
ttatgctagccaactcaccaacatgcaacatctatgtttagattgatgat---------------atgtgatagaatggaataaattaagattttattgt |
265 |
Q |
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| T |
41983330 |
ttatgctagccaactcaccaacatgcaacacctatgtttagattaatgatatatgatgaaatgaaatgggatggaatggaataaattaagattttattgt |
41983429 |
T |
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| Q |
266 |
ttggattgtcattataaaggtgggatggaactcaatagcatgtattctatctctgcttctc |
326 |
Q |
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| T |
41983430 |
ttggattgtaattacaagggtgggatggaactcaatagcatgtattccatccctgattctc |
41983490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 41983062 - 41983147
Alignment:
| Q |
1 |
atatgaaagaaggaatattcttgcatcaactcatctcatctcaattatagtaaaaatcaaactagaatgtgcattattctttttga |
86 |
Q |
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| T |
41983062 |
atatgaaagaaggaatattcttgcatcaactcatctcatctcaattatagtaaaaatcaaactagaatgtgcattattctttttga |
41983147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 295
Target Start/End: Original strand, 13016163 - 13016219
Alignment:
| Q |
239 |
gaatggaataaattaagattttattgtttggattgtcattataaaggtgggatggaa |
295 |
Q |
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| T |
13016163 |
gaatggaataaattaaaatttcattgtttggatagtaattaaaaggatgggatggaa |
13016219 |
T |
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