View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9357_low_5 (Length: 520)
Name: NF9357_low_5
Description: NF9357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9357_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 443; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 12 - 502
Target Start/End: Original strand, 9941543 - 9942032
Alignment:
| Q |
12 |
acagacacagctagtatagattttgcaacacaattccaaaccttaaagcttgaaacataacatctattccaggctccaccgctttagcaaattttttctt |
111 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
9941543 |
acagacacagctagtatagattttgcaacgcaattccaaaccttaaagcttgaaacataacatctattgcaggcaccaccgctttagcaaattttttctt |
9941642 |
T |
|
| Q |
112 |
tatcactttctccattgcatcctaaaatcaccaaaagccttaataaagaaatggtcaaaaaacatgactagtagatgcgaagttattgatgtgtaaacta |
211 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9941643 |
tatcactttctccattgcatcctaaaatcaccaaaa-ccttaataaagaaatggtcaaaaaacatgactagtagatgcgaagttattgatgtgtaaacta |
9941741 |
T |
|
| Q |
212 |
aatcccaaagaaccttaagaaaaagataattcaccatatcaacaatattatgaaccaaaacaaggaaaatagaaaacactaaaacatggctaaatgaaag |
311 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
9941742 |
aatcccaaagaaccttaagaaaaagagaattcaccatatcaaaaatattatgaaccaaaacaaggaaaatagaaaacactaaaacagggctaaatgaaag |
9941841 |
T |
|
| Q |
312 |
cataagatatatagttgtgacgaaaagaattgccatatcagtcggggcaatggaaaacaggactaattgaattcagaaatttcatagcctcataaatatg |
411 |
Q |
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|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
9941842 |
cataagatatatagttttgacgaaaagaattgccttatcagtcggggcaatggaaaacaggactaattgaattcagaagtttcatagactcataaatatg |
9941941 |
T |
|
| Q |
412 |
caacagaaagtgagctgtatttctgcgtgttccaatataatcagggctctacaatagactttcatcaaaaagaaatttcacatgccatacc |
502 |
Q |
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| T |
9941942 |
caacagaaagtgagctgtatttctgcgtgttccaatataatcagggctctacaatagactttcatcaaaaagaaatttcacatgccatacc |
9942032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 12 - 229
Target Start/End: Original strand, 8208001 - 8208217
Alignment:
| Q |
12 |
acagacacagctagtatagattttgcaacacaattccaaaccttaaagcttgaaacataacatctattccaggctccaccgctttagcaaattttttctt |
111 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||| ||| ||||| |
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| T |
8208001 |
acagacacagctattatagattttgcaacgagattccaaaccttaaagcttgaaacataacatctattgcaggcaccactgctttagcaactttattctt |
8208100 |
T |
|
| Q |
112 |
tatcactttctccattgcatcctaaaatcaccaaaagccttaataaagaaatggtcaaaaaacatgactagtagatgcgaagttattgatgtgtaaacta |
211 |
Q |
| |
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||| ||||||||||||||||||||||| |||||||| |||||||| |||| || |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
8208101 |
tattgctttctccattgcatcctaaaattaccaaaag-cttaataatgaaa-ggatgaaaagcatgactagtagatgcgaagttattgatgtgtaaacta |
8208198 |
T |
|
| Q |
212 |
aa-tcccaaagaaccttaa |
229 |
Q |
| |
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|| ||||||||| ||||| |
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| T |
8208199 |
aacccccaaagaatcttaa |
8208217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 169 - 211
Target Start/End: Original strand, 9335260 - 9335302
Alignment:
| Q |
169 |
aaaaacatgactagtagatgcgaagttattgatgtgtaaacta |
211 |
Q |
| |
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|||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
9335260 |
aaaaacatgactagtagatgtaaaggtattgatgtgtaaacta |
9335302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 42363145 - 42363339
Alignment:
| Q |
18 |
acagctagtatagattttgcaacacaattccaaaccttaaagcttgaaacataacatctattccaggctccaccgctttagcaaattttttctttatcac |
117 |
Q |
| |
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||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||| ||| ||||||||| | |
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| T |
42363145 |
acagctactatagattttgcaacgagattccaaaccttaaagcttgaaacataacatctattgcaggcaccactgctttagcaactttgttctttatcgc |
42363244 |
T |
|
| Q |
118 |
tttctccattgcatcctaaaatcaccaaaagccttaataaagaaatggtcaaaaaacatgactagtagatgcgaagttattgatgtgtaaactaaa |
213 |
Q |
| |
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|||||||||||||||||||||| ||||| ||||||||||| |||| || | |||| ||||||||||||||| |||||||||| | ||||||||||| |
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| T |
42363245 |
tttctccattgcatcctaaaattaccaagagccttaataatgaaa-ggacgaaaagcatgactagtagatgtgaagttattggtatgtaaactaaa |
42363339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 333 - 386
Target Start/End: Original strand, 42363818 - 42363867
Alignment:
| Q |
333 |
gaaaagaattgccatatcagtcggggcaatggaaaacaggactaattgaattca |
386 |
Q |
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|||||||||||||||||| |||| ||||| ||||||||||||||||||||| |
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| T |
42363818 |
gaaaagaattgccatatc----ggggtaatgggaaacaggactaattgaattca |
42363867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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