View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9357_low_52 (Length: 315)
Name: NF9357_low_52
Description: NF9357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9357_low_52 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 15 - 315
Target Start/End: Original strand, 31814175 - 31814489
Alignment:
| Q |
15 |
gctttgattagttggggactttttcataaggtataatatgcaaatcaatttttagaaaccaaacttagaagatctctatgttatgattcaattgctttta |
114 |
Q |
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| T |
31814175 |
gctttgattagttggggactttttcataaggtataatatgcaaatcaatttttagaaaccaaacttagaagatctctatgttatgattcaattgctttta |
31814274 |
T |
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| Q |
115 |
acttctcaacccacggtttaattattcaaaccggtagtttggttcga-ttttttgactcaaacagaagcttgtgattgcacaaatttggatacatgtctg |
213 |
Q |
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| T |
31814275 |
acttctcaacccacggtttaattattcaaaccggtagtttggttcgatttttttgactcaaacagaaccttgtgattgcacaaatttggatacatgtctg |
31814374 |
T |
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| Q |
214 |
gcaattttttccttcataa-------------caaatttttcttgttcttattttattcctataaattcattttcgcatttacatgctaatattatactc |
300 |
Q |
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| T |
31814375 |
gcaattttttccttcataacaggtgttgaatccaaatttttcttgttcttattttattcctataaattcattttcgcatttacatgctaatattatactc |
31814474 |
T |
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| Q |
301 |
aacaattgtttaatt |
315 |
Q |
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| T |
31814475 |
aacaattgtttaatt |
31814489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 15 - 268
Target Start/End: Complemental strand, 24280199 - 24279945
Alignment:
| Q |
15 |
gctttgattagttggggactttttcataaggtataatatgcaaatcaattttt-agaaaccaaacttagaagatctctatgttatgattcaattgctttt |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24280199 |
gctttgattagttggggactttttcataaggtataatatgcaaatcaattttttagaaaccaaacttagaagatctctatgttatgattcaattgctttt |
24280100 |
T |
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| Q |
114 |
aacttctcaacccacggtttaattattcaaaccggtagtttggttcgattttttgactcaaacagaagcttgtgattgcacaaatttggatacatgtctg |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||| |
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| T |
24280099 |
aacttctcaacccacggtttaattattcaaaccggtagtttggttcgattttttgactcaaacagaaccttgtaattacacaaatttggatacatgtctg |
24280000 |
T |
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| Q |
214 |
gcaattttttccttcataacaaatttttcttgttcttattttattcctataaatt |
268 |
Q |
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| T |
24279999 |
gcaattttttccttcataacaaatttttcttgttcttattttattcctataaatt |
24279945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 15 - 121
Target Start/End: Original strand, 36929988 - 36930096
Alignment:
| Q |
15 |
gctttgattagttggggacttttt-cataaggtataatatgcaaatcaat-ttttagaaaccaaacttagaagatctctatgttatgattcaattgcttt |
112 |
Q |
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|||||||||||||||| ||||||| |||||||| |||||||||||||||| |||||||||| |||||| ||||||||||| |||||| |||||||||||| |
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| T |
36929988 |
gctttgattagttgggcacttttttcataaggtgtaatatgcaaatcaatgttttagaaactaaacttggaagatctctaggttatggttcaattgcttt |
36930087 |
T |
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| Q |
113 |
taacttctc |
121 |
Q |
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||||||||| |
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| T |
36930088 |
taacttctc |
36930096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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